BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491631
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31130.1 | Symbols: | Protein of unknown function (DUF1218)... 1317 0.0
> AT4G31130.1 | Symbols: | Protein of unknown function (DUF1218)
| chr4:15136935-15138840 REVERSE LENGTH=1063
Length=1063
Score = 1317 bits (713), Expect = 0.0
Identities = 801/842 (95%), Gaps = 12/842 (1%)
Strand=Plus/Plus
Query 160 CCACAAATCTCCAGATTCATTCGTCGTCTCGGTTAATGTTAGACGGAGAAGAAG--A-GA 216
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 187 CCACAAATCTCCAGATTCATTCGTCGTCTCGGTTAAGGTTAGACGGAGAAGAAGATACAA 246
Query 217 CAAATATGGCGGTTAGTATGAAACAAATGTCGTTGGTCGTCTCTGCTTTGGGCGTCTTGT 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 247 CAAATATGGCGGTTAGTATGAAACAAATGTCGTTGGTCGTCTCTGCTTTGGGCGTCTTAT 306
Query 277 CCTTTGTTTTGGGAGTTATCGCGGAGAACAAGAAGCCTGCGTCTGGGACTCCGATAAGCG 336
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 307 CCTTTGTTTTGGGAGTTATCGCCGAGAACAAGAAGCCTGCGTCTGGGACTCCAATAAGTG 366
Query 337 GAAAGGGAGTAGTTATCTGCAAATATCCATCTGATCCATCTGTTGTCTTGGGATACCTTT 396
|||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 367 GAAAAGGAGTAGTTATCTGCAAATACCCATCTGATCCAACTGTTGCCTTGGGATACCTTT 426
Query 397 CTGCTGCTTTTCTCCTTGCCTGCACTGTAGCAGGATACAAATCCTTGTTCATCTCTTACA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTGCTGCTTTTCTCCTTGCCTGCACTGTAGCAGGATACAAATCCTTGTTCATCTCTTACA 486
Query 457 AGGGAAAATCCGTTCCTAACTCTGTCTTGTTCAAAAGCACCAGCTTCTCTGTGTTCTTCA 516
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGGGAAAGTCTGTTCCTAACTCTGTCTTGTTCAAAAGCACCAGCTTCTCTGTGTTCTTCA 546
Query 517 ACATTGCCTTGATAACATCTGGACTGGCCTTGTCTCTGTTGCTCTGGCCAACCATTACAG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ACATTGCCTTGATAACATCTGGACTGGCCTTGTCTCTGTTGCTCTGGCCAACCATTACAG 606
Query 577 AGCAACTTCACTTGACCCGTAATGTTCACCGAAACTTAGAGAGCAGTTGCCCCACGGCTA 636
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 607 AACAACTTCACTTGACCCGTAATGTTCACCGAAACTTAGAAACCAGTTGCCCCACGGCTA 666
Query 637 AGACCGGTCTGCTTGGTGGAGGTGCCTTTGTGTCTTTGGACTCATGCCTTTTCTGGTTGG 696
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 667 AGACCGGTCTGCTTGGTGGAGGTGCCTTTGTGTCTTTGGACTCGTGCCTTTTCTGGTTGG 726
Query 697 TTGCTCTGATGCTCGCTGATAACGCCCGTGAAGACCATTTTGATGAAGTTGAAAACAGAA 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 TTGCTCTGATGCTCGCTGATAACGCCCGTGAAGACCATTTTGATGAAGTTGAAAGCAGAA 786
Query 757 ACATGGATGGCAACTCTGCCTCGAGGGATGTTAATCTCAAGATTGATGCTTGAGAGAATG 816
||| ||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 787 GCATCGATGGGAACTCTTCCTCCAGGGATGTGAATCTCAAGATTGATGCTTGAGAGAATG 846
Query 817 ATATGCCTT-ATTGGTATTGGGTATAAGAAGGGGTTTT-AGTTTGTTTTCTACTTGTTTG 874
|||||| || ||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 847 ATATGCTTTTATTGGTATTGGGTATAAGAAGGGTTTTTCA-TTTGTTTTCTACTTGTTTG 905
Query 875 ATTAGGAAAATAATCAtttgtttcttctggtt-ttctactttttcttttttAATGATTTG 933
|||||||||||||| |||||||||||||| || || | ||||| ||||||||||||| |
Sbjct 906 ATTAGGAAAATAATAATTTGTTTCTTCTG-TTGTT-T--TTTTT-TTTTTTAATGATTGG 960
Query 934 CTAGAATGTTATGAAACCCATCTCTGCACCTTGATGCATTGTGATTCATAAGTTGTATAT 993
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 961 CTAGAATGTTATGAAACCCATCTCTGCACCTTGATGCATTGTGATTCATAAGCTGTATCT 1020
Query 994 GT 995
||
Sbjct 1021 GT 1022
Score = 171 bits (92), Expect = 2e-41
Identities = 110/117 (94%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 1 AAGATAAATATGGAATCTTTTTATTTATATTGGTCAACAGAATCTTGAAAGAGCCC--AA 58
||||||||||||||||| |||||||| | |||||||||||||||||| |||||||| ||
Sbjct 1 AAGATAAATATGGAATC-TTTTATTT-T-TTGGTCAACAGAATCTTG-AAGAGCCCAAAA 56
Query 59 -AACAACAACACTCGGAGACTTTTTAGGGCTCATCCCCGAATTATCAGTGCAAGTGG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CAACAACAACACTCGGAGACTTTTTAGGGCTCATCCCCGAATTATCAGTGCAAGTGG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5