BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491637
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31080.2 | Symbols: | Protein of unknown function (DUF2296)... 1262 0.0
> AT4G31080.2 | Symbols: | Protein of unknown function (DUF2296)
| chr4:15120888-15123442 FORWARD LENGTH=1909
Length=1909
Score = 1262 bits (683), Expect = 0.0
Identities = 855/934 (92%), Gaps = 27/934 (3%)
Strand=Plus/Plus
Query 760 CAGAGATATGACCCCGACCCAGCGGCAAAAGCAGCTGCTGCAACTGTTCTGGCATCCAAA 819
|||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||
Sbjct 853 CAGAGATATGACCCGGACCCAGCTGCAAAGGCAGCTGCCGCAACTGTCCTGGCATCCAAA 912
Query 820 TTGGGTGCCGATTCAGGCTTGAAAGTATTTTTAGGAGATGAATCCCAACTAGATCCATCC 879
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 913 TTGGGTGCCGATTCAGGCTTGAAAGTATATTTAGGAGATGAATCCCAACTCGATCCATCC 972
Query 880 TCGGGCAAGAGCAATGACATGGAGGTTAACCAATCACGTGGGTTGAGGAATCGAAGACAA 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 973 TCGGGCAAGAGCAATGACATGGAGGTTAACCAATCACGTGGGTTGAGGAATCGAAGGCAA 1032
Query 940 CCAAATACAAGACCCCACGGTTCTGGGAGCACTTCAACACATCATTCTGATGATGAGTCT 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CCAAATACAAGACCCCACGGTTCTGGGAGCACTTCAACACATCATTCTGATGATGAGTCT 1092
Query 1000 CACCATTCTGGAACAAGCGAGAGATTTCCAGGCGCCACAGAGCAAAACCAGCAGATGTTG 1059
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1093 CACCATTCTGGAACAAGCGAGAGATTTCCAGGCACCACAGAGCAAAACCAGCAGATGTTG 1152
Query 1060 GTTGAGCATTACAGCCCTCAGGGATATGCTGCTCACGATGGCAGTTGGATCTCACGCATT 1119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1153 GTTGAGCATTACAGCCCTCAGGGATATGCTGCTCATGATGGCAGTTGGATCTCACGCATT 1212
Query 1120 GCAGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCACTCATTTGTGGAAACTGT 1179
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1213 GCGGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCGCTCATTTGTGGAAACTGT 1272
Query 1180 CATATGCATAATGGACTTGCTCGGAAAGAGGATTTTGCATACATTACATACTATTGCCCT 1239
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1273 CGTATGCACAATGGACTTGCTCGGAAAGAGGATTTTGCTTACATTACATACTATTGCCCT 1332
Query 1240 CACTGTAATGCTCTGAACAAACCGAAGCATACAGAGGAGAACGCACTTCTTCCTGCTGTT 1299
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||
Sbjct 1333 CACTGTAATGCTCTGAACAAACCGAAGCATTCAGAGGAGAATGTACTTCTTCCTGCTATT 1392
Query 1300 TCTGCTTCGCCGATCATAGACTCACTGCCATTGATTGAAACCAGCGAAGTGGTTAATAGC 1359
|| ||||| || |||| |||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 1393 TCCGCTTCACCAATCACAGACTCTCTGCCACTGATTGAGACCAGCGAAGTGGTTAATAGC 1452
Query 1360 AGCAGCTCGAGTAGTGAACGTGGAAATAGCCCCGCTCCAGAAATAAAAGAGGAAGCTGTG 1419
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1453 AGCAGCTCGAGTAGTGAACGTGGAAGTAGCCCCACTCCAGAAATAAAAGAGGAAGCTGCA 1512
Query 1420 ACTGCTGAGACCGGGACAGCTAGCTGAGGAAGATTCAGTGAGCTAAAGAAGAAGGCTTTC 1479
| | |||||||||||||| | ||||||||||||| ||||||||||| |||||||||||
Sbjct 1513 ATTACTGAGACCGGGACACCGAGCTGAGGAAGATCCAGTGAGCTAA-GAAGAAGGCTTAG 1571
Query 1480 TTGTGTTGCTGTTACGGAAAAGAGAGATtgtgtgtgtgtgtgtgtTTGTGGATGCGAGTA 1539
| |||||| || ||| || |||||| ||||||||| ||||||||||||||||||||||
Sbjct 1572 TCGTGTTGGTGCTACAGAGAAGAGATTTTGTGTGTGCATGTGTGTTTGTGGATGCGAGTA 1631
Query 1540 CTCGTTCAGGTAATCTTATGCTA-------CT--TA----------C--A--GTTTTGAT 1576
||| ||||||||||||||||||| || || | | ||||||||
Sbjct 1632 CTCATTCAGGTAATCTTATGCTATGGATTGCTAATATATGAAGGTGCTTACAGTTTTGAT 1691
Query 1577 TTTGGTCTGTTTCTATACAACAAGACAATAGGGTTTTGGTGGGTAAATATACGATTCTGA 1636
| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1692 TCTGGTTTGTTTCTATACAACAAGACAATAGGGTTTTGGTGGGTAAATATGCGATTCT-A 1750
Query 1637 -TGTCGTAAACTATGATTGTTATACGATTTTGGG 1669
|||||||||| | |||||||||||| |||||||
Sbjct 1751 CTGTCGTAAACGACGATTGTTATACG-TTTTGGG 1783
Score = 1088 bits (589), Expect = 0.0
Identities = 717/772 (93%), Gaps = 35/772 (5%)
Strand=Plus/Plus
Query 1 GTACCGGTGGATCTCGAATTCCTCCACCCTTTCCCTTTTGGCTTCTCGAAGGAGAAGAAA 60
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 7 GTACCGGTGGATCTCGAATTCCT-----C---CCC-TTTGGCTTCTCGAAGGAGAAGAAA 57
Query 61 ACTGTCGgagagagagagagagaAGAAGGCAATCATCATCGCCAGTTGTTCTGT-TCTTC 119
| |||| | |||||| | |||||||| ||||||||||||||||||||||| | |||||
Sbjct 58 AGTGTC---G-GAGAGA-A-AGAAGAAGCCAATCATCATCGCCAGTTGTTCT-TCTCTTC 110
Query 120 GAGATATTCAAATTCTCCGTCTCTAGAGAATTTCAGATCAAGAGAATCAGGCAAGTGGGC 179
||||||||||||| ||||||||||||||||||||| ||||||||||| | ||| |
Sbjct 111 GAGATATTCAAATCCTCCGTCTCTAGAGAATTTCATATCAAGAGAAT----C-AGT--G- 162
Query 180 GATTCTGTAGTTTGTGGTGGTGGTGGTTGGAAGGT--GATAGGATATGGCGCAGGAGCAG 237
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 163 GTTTCTGTAGTTTGTGGTGGTGGTGGTTGGAAGGTAAGATAGGATATGGCGCAGGAGCAG 222
Query 238 GAAGGAGCGGTGGTTGAGAGCGATGTGCCGAATGATTCCGT-CGCCGCTGCTGT-G--G- 292
||||||||||| ||||||| | || ||||||||||||| | ||||||||| || | |
Sbjct 223 GAAGGAGCGGTCGTTGAGAAAGGTGAGCCGAATGATTCC-TCCGCCGCTGCCGTGGCCGC 281
Query 293 --CCGCAACCGCAACCGCCGATAGCGTGAAGAAGAAGCAAAAGGGATTCTTCTCGCGTTT 350
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 282 AACCGCAACCGCAACCGCCGATAGCGTGAAGAAGAAGCAAAATGGATTCTTTTCGCGTTT 341
Query 351 ATGGAATGGGATATTTAGGGTTAGAGGTGACGATTTTGAGAAGAGACTTCAATACATCTC 410
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 342 GTGGAATGGGATATTTAGGGTTAGAGGTGACGATTTCGAGAAGAGACTTCAATACATCTC 401
Query 411 AAGGGAAGAAGCTACTGTTTTATCAAGGATGAAGCGTAGATCGATTACATGGAGGAAACT 470
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 402 AAGGGAAGAAGCTACTGTTTTATCAAGGATGAAGCGTAGATCGATTTCATGGAGGAAACT 461
Query 471 CACCAGAAATCTCATCGTTTCCTCCGTATTATTCGAGATAATTGCTGTGGGTTATGCGAT 530
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 462 CACCAGAAATCTCATCGTTTCCTCTGTATTATTCGAGATAATTGCTGTGGGTTATGCGAT 521
Query 531 CCTGACAACCAGAACGGAAGATTTGGATTGGAGAATGAGGAGTTTCCGGATCTTGCCAAT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CCTGACAACCAGAACGGAAGATTTGGATTGGAGAATGAGGAGTTTCCGGATCTTGCCAAT 581
Query 591 GTTTATCTTACCTGCTGTTTCTGCTCTTGCTTATTCCTCAATCGTCAGCTTCTCAAAGAT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 GTTTATCTTACCTGCTGTTTCTGCTCTTGCTTATTCCTCAATCGTCAGCTTCTCAAAGAT 641
Query 651 GTTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCAGAAAGGTTGGCTAAAAT 710
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 642 GTTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCTGAAAGGTTGGCGAAAAT 701
Query 711 CAATGAGCTTAAAGAAAGGACCAATTATTATACCACACAACAACTTATTCAG 762
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CAATGAACTTAAAGAAAGGACCAATTATTATACCACACAACAACTTATTCAG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5