BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491638
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31070.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2686 0.0
> AT4G31070.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15118696-15120537 REVERSE LENGTH=1842
Length=1842
Score = 2686 bits (1454), Expect = 0.0
Identities = 1689/1803 (94%), Gaps = 13/1803 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAGAGCTTTTTCTTCCCGCTTAAACTTGGAGCTCGGCAATAAGCTCAAGGGTTTG 60
|||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCAAGGGCGTTGTCTTCCCGCTTAAACTTGGAGCTCGGCAATAAGCTGAAGGGTTTG 60
Query 61 GTGTCGGGA-CAACTCCATGATGAAGCATTGAGACTGTACAAGCTAAATATTCATCCTTT 119
||||| ||| ||| || | ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 61 GTGTC-GGACCAATTCTACGATGAAGCATTGAGACTGTACAAGCTAAAGATTCATTCTTT 119
Query 120 AGGCACCAATGGCTTCACAGCTATTCTTCCTTCTGTCATCAAAGCTTGCTCTTTTCAACA 179
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 AGGGACCAATGGCTTCACAGCTATTCTTCCTTCTGTCATCAAAGCTTGCGCTTTTCAACA 179
Query 180 AGAGCCTTTCTTACTTGGCGCACAGCTTCATTGCCTTTGT-TTTAAGTCAGGCGCTGATC 238
|||||||||||||||||||||||||||||||||||||||| | ||| |||| || |||
Sbjct 180 AGAGCCTTTCTTACTTGGCGCACAGCTTCATTGCCTTTGTCTCAAAG-CAGGTGCAGATT 238
Query 239 GTGATACTGTGGTTTCCAATTCTCTCATCTCTATGTATGCGAAACTT-TCTAGAGCATAC 297
||||||| || ||||||||||||||||||||||||||||||||| || || ||| |||
Sbjct 239 GTGATACAGTTGTTTCCAATTCTCTCATCTCTATGTATGCGAAA-TTCTCGAGAAAATAT 297
Query 298 GCTGCGCGTAAGGTGTTCGATGAAATGCTTCAAAGAGATACTGTTAGCTATTGTTCCATC 357
|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 298 GCTGTACGTAAGGTATTCGATGAAATGCTTCACAGAGATACAGTTAGCTATTGTTCCATC 357
Query 358 GTCAATTGTTATTGCCAGGATGGGTTGTTGTCTGAAGCGATGAAGTTGCTTAAGGAGATG 417
||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 358 ATCAATAGTTGTTGCCAGGATGGGTTGTTGTATGAAGCGATGAAGTTGATTAAGGAGATG 417
Query 418 TATTTTTATGGTTTTGTTCCAAAGTCCGAGCTGGTTGCATCTCTGTTGGCTCTCTGCACC 477
||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 418 TATTTTTATGGTTTTATTCCCAAGTCCGAGCTGGTTGCATCTCTATTGGCTCTCTGCACT 477
Query 478 CGCATGGGAAGCAGCAGTAAGGTAGCAAGAATGCTTCATGCTCTTGTTCTTGTTGATGAG 537
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 CGCATGGGAAGCAGCAGTAAGGTAGCAAGAATGTTTCATGCTCTTGTTCTTGTTGATGAG 537
Query 538 AGGATACAGGAATCAGTTCTATTATCAACGGCATTGCTTGATATGTACTTAAAGTTTGAT 597
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 538 AGGATGCAGGAATCAGTTCTATTATCAACGGCTTTGGTTGATATGTACTTAAAGTTTGAT 597
Query 598 GATCCTGCAGCGGCTTTCCATGTGTTTGATCAAATGGAGCTGAAGAATGAGGTCTCATGG 657
|||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 598 GATCATGCGGCGGCTTTCCATGTGTTTGATCAGATGGAGGTGAAGAATGAGGTCTCATGG 657
Query 658 ACTGCCATGATCTCCGGTTGTGTTGCTAATTATAATTATGAAGTGGGCATTGAttttttt 717
|||||||||||||||||||||||||| ||| | ||||||||| ||||| ||||||| |||
Sbjct 658 ACTGCCATGATCTCCGGTTGTGTTGCAAATCAGAATTATGAAATGGGCGTTGATTTGTTT 717
Query 718 CGAGCAATGCAGAGAGAAAATTTGAGGCCCAATCGTGTCACACTGTTGTCTGTTTTACCT 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGAGCAATGCAGAGAGAAAACTTGAGGCCCAATCGTGTCACACTGTTGTCTGTTTTACCT 777
Query 778 GCATGTGTAGAATTAGGA-TATGGCTTAAGGCTGGTGAAGGAGATTCATGGATTTTCTTT 836
|||||||||||||| | | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 778 GCATGTGTAGAATT-GAATTATGGCTCAAGTCTGGTGAAGGAGATTCATGGATTTTCTTT 836
Query 837 TCGTCATGGATTCCATTCTGACGATCGGTTAATAGCTGCTTTTATGACCATGTACTGCAG 896
||||||||||| |||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 837 TCGTCATGGATGCCATGCTGACGAGCGGTTAACAGCTGCTTTTATGACCATGTACTGCAG 896
Query 897 ATGTGGTAGTGTAAGTCTCTCTAGGCTACTTTTCGAAACATCAAAAGTGAGAGATGTTGT 956
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 897 ATGTGGTAATGTAAGTCTCTCTAGGGTTCTTTTCGAAACATCAAAAGTGAGAGATGTTGT 956
Query 957 AATGTGGAGTTCAATGATTAGCGGCTATGCGGAGAATGGAGATTGCTCTGAAGCTATGAA 1016
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 957 AATGTGGAGTTCAATGATTAGCGGCTATGCGGAGACTGGAGATTGCTCTGAAGTTATGAA 1016
Query 1017 TCTGTTAAGTCAAATGAGAAAAGAAGGAAGTGAACCCAACTCGGTTACTCTGTTGGCTGT 1076
|||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||| |
Sbjct 1017 TCTGTTAAATCAAATGAGAAAAGAAGGAATTGAAGCCAACTCGGTTACTCTATTGGCAAT 1076
Query 1077 TGTCTCAGCTTGCACCCATTCAG-CATCGTTGAAAATTGCATCTACAGTCCATTCTCAAA 1135
|||||||||||| ||| |||| | ||| ||||| ||||||||||||||||||||||||
Sbjct 1077 TGTCTCAGCTTGTACCAATTC-GACATTGTTGAGTTTTGCATCTACAGTCCATTCTCAAA 1135
Query 1136 TCCTGAAATGTGGCTTCATGTCACATATCTTATTGAGCAGCGCCCTCATAGATATGTATG 1195
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1136 TCCTGAAATGTGGCTTCATGTCACATATCTTATTGGGAAACGCCCTCATAGATATGTATG 1195
Query 1196 CAAAGTGTGGCAGTCTTCCTGCAGCGCGTGAAGTATTTTATGAACTTAATGAGAAAGATC 1255
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 CAAAGTGTGGCAGTCTTTCTGCAGCGCGTGAAGTATTTTATGAACTTACTGAGAAAGATC 1255
Query 1256 TTGTGTCATGGAGCTCAATGATTAACGCATACGGTCTTCATGGACATGGTTCAGAAGCTT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTGTGTCATGGAGCTCAATGATTAACGCATACGGTCTTCATGGACATGGTTCAGAAGCTT 1315
Query 1316 TAGAAATCTTTAAAGGGATGATAAAAGCTGGACATGAAGTAGATGGA-ATGGCATTTCTT 1374
||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||
Sbjct 1316 TAGAAATCTTTAAAGGGATGATAAAAGGTGGACATGAAGTAGATG-ATATGGCGTTTCTT 1374
Query 1375 GCAGTTTTATCGGCTTGCAACCATGCGGGCCTGGTAGAAGAAGCTCAAACCATATTCACA 1434
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 GCAATTTTATCGGCTTGCAACCATGCTGGCCTGGTAGAAGAAGCTCAAACCATATTCACA 1434
Query 1435 CAAGCTGGGAAATACCACATGCCAGTCACATTGGAGCATTATTCTTGCTATATCAATCTT 1494
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1435 CAAGCTGGGAAATACCACATGCCAGTCACATTGGAGCATTATGCTTGCTATATCAATCTT 1494
Query 1495 CTTGGCAGGTTTGGAAAGATTGACGATGCCTTTGAGGTCACAATAAATATGCCCATGAAA 1554
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1495 CTTGGCAGGTTTGGGAAGATTGACGATGCCTTTGAGGTCACAATAAATATGCCAATGAAA 1554
Query 1555 CCAAGTGCCAGAATATGGAGTTCTCTCCTATCTGCTTGTGAGACTCATGGCAGGCTTGAT 1614
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1555 CCAAGTGCCAGAATATGGAGTTCTCTGCTATCTGCTTGCGAGACTCATGGCAGGCTTGAT 1614
Query 1615 GTTGCATGTAAAATTATTGCAAACGAGCTAATGAAATCTGAACCTGACAATCCAGCCAAT 1674
|||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1615 GTTGCAGGAAAAATTATTGCAAACGAGCTAATGAAATCTGAACCCGATAATCCAGCCAAT 1674
Query 1675 TATGTATTGCTTAGCAAGATTCACACAGAATCTGGTAACTGCGATGCTGCAGAAGAAGTG 1734
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1675 TATGTATTGCTTAGCAAGATTCACACAGAATCTGGTAACTACCATGCTGCAGAAGAAGTA 1734
Query 1735 TGGAAGTTTATGCAAAGACGGCAACTGAACAAATGCTACGGATTTAGTAAAATTGAACTC 1794
||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||| |
Sbjct 1735 AGGAGGGTTATGCAAAGACGGAAACTGAACAAATGCTACGGATTCAGTAAAATTGAAC-C 1793
Query 1795 TGA 1797
|||
Sbjct 1794 TGA 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5