BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491639
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 1626 0.0
AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 678 0.0
> AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase family
| chr4:15114250-15115633 FORWARD LENGTH=1122
Length=1122
Score = 1626 bits (880), Expect = 0.0
Identities = 1008/1070 (94%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 1 GTTTCCGTCGTTTTTGATTGGCT-AAAATTGAATTACTGTATATTT-CAGAAATATA-TT 57
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||
Sbjct 1 GTTTCCGTCGTTTTTGATTGGCTAAAAATTGAATGACTGTATATTTACAGAAATAAATTT 60
Query 58 TAAGTAAATTCCA-TTTCTTCTTAAGGACCGTGTTATGGAGTTGCTGAATGGAGTAGAAA 116
||||||||||||| ||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 61 TAAGTAAATTCCACTTTCTTCTTTAGTACAGAGTTATGGAGTTGCTGAATGGAGTAGAAA 120
Query 117 CTCTAATCTCGGGGCTTCATCATCACCATCGTACTAACGCAAAGAGAAACAGAAGAGCCA 176
||||| | ||||| ||||||||||||||||||||||||| |||||||||||| || |
Sbjct 121 CTCTAGTTTCGGGAATTCATCATCACCATCGTACTAACGCGAAGAGAAACAGATTAGTTA 180
Query 177 GATCTGTCAAGATCTTAAACTCAGGGAATTATGAAATCCCCAAAAAGTGCCAGTGTTTTG 236
|||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||
Sbjct 181 GATCTGTCAAGATCTTAAACTCCGGGAATCATGAAATCCCCAGAAAGTGCCTGTGTTTTG 240
Query 237 ATCTTTACGACCAATTGGTTCCATACAAGAACGCTTGGGCATGGCAGAAGAGCATCGTCG 296
||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 241 ATCTTTACGACAAATTGGTTCCATACAAGAAAGCTTGGTCATGGCAGAAGAGCATTGTCG 300
Query 297 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCCCCGATACAGTGATTTTATTAC 356
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 301 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCGCTGATACAGTGATTTTGTTAC 360
Query 357 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGACA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGATA 420
Query 417 TAAAGGATGCTCCTTTCGATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAAAGGATGCTCCTTTCAATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 480
Query 477 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 540
Query 537 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 600
Query 597 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGTAGCCAAAAAGTGGCGG 656
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 601 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGG 660
Query 657 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACAA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTA 720
Query 717 CAGATCTAACACCATTCAACTGGATCGTTCCATGTGGGATTAAAGACCGAAAAGTTGGAA 776
||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 721 CAGATCTAACACCATTCAACTGGATAGTTCCATGTGGGATTAGAGACCGGAAAGTTGGAA 780
Query 777 GCATAAAAGGCTTGCTTGAAGATGGAGAACACGGAAAGGTTGATGATTTGACGTTGATTC 836
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 781 ACATAAAGGGCTTGCTTGAAGATGGAGAACACGGAATGGTTGATGATTTGAGGTTGAT-C 839
Query 837 -ATGTAGCTCACGAGTCTTTACTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAA 895
|| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 840 GATATAGTTCACGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAA 899
Query 896 AAGCAAGCAGTTCCAGATCCTAAAATTCTGAAAGCTGAGCCTTTCAAACGATTGGAGTGC 955
|||||| ||||| |||||||||| |||||| |||||||| |||| |||||||||||||||
Sbjct 900 AAGCAAACAGTTTCAGATCCTAATATTCTGTAAGCTGAGTCTTTTAAACGATTGGAGTGC 959
Query 956 TAAAAGGAAGGTGTTATTGGTAGAACATAATCCTGGCAATCTCTATACCATTCTTGTTAA 1015
||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 960 TAAAAGGAAGGTGGTATTGGTAGAACAAAATCCTTGCAATCTCTATAGCATTCTTGTTAA 1019
Query 1016 GTTTTGAACATAAAACATCTTATCTACATAGAAGGTTTTATTGGATATTT 1065
||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1020 GTTTTGAACATAATG-ATCTTATCTACATAGAAGGTTTTATTGGATGTTT 1068
> AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase family
| chr1:17484365-17485470 FORWARD LENGTH=843
Length=843
Score = 678 bits (367), Expect = 0.0
Identities = 654/790 (83%), Gaps = 29/790 (4%)
Strand=Plus/Plus
Query 133 TCATCATCACCATCGTACTAAC-GCAAAGAGAAACAGAAG-AGCCAGATCTGTCAAGATC 190
|||||| ||||||| || | || | || |||||||| || | | | |||| |||||||
Sbjct 48 TCATCACCACCATCTTAGTGACTTC-AACAGAAACAG-AGTATCTACATCTCTCAAGATA 105
Query 191 TTAAACTCAG-GGAATTATGA-AATCCCCAA-AAAGTGCCAGTGTTTTGATCTTTACGAC 247
| ||||| | |||| | | || ||||| |||||| ||||||||||||| |||||
Sbjct 106 ATGAACTC-GAAGAATCA-CACAA-ACCCAAGAAAGTGTGAGTGTTTTGATCTCTACGAT 162
Query 248 CAATTGGTTCCATACAAGAACGCTTGGGCATGGCAGAAGAGCA-TCGTCGAGGAG-AAAA 305
||||| ||||||||||||| |||||| ||||||| || |||| || || | ||| ||||
Sbjct 163 CAATTAATTCCATACAAGAAAGCTTGGTCATGGCAAAAAAGCATTC-TCAATGAGAAAAA 221
Query 306 AGACATTGATTGATAGAAACCAAGACTGCCCCGATACAGTGATTTTATTACAACACT-CT 364
|| | |||||||||| ||||||||| || | ||| || | ||| || ||||||| | ||
Sbjct 222 AG-CTTTGATTGATAAAAACCAAGAGTGTTCAGATTCATTAATTATACTACAACA-TCCT 279
Query 365 CCTGTTTACACAATGGGAACTGCTAG-TACAGAGGATTATCTCAATTTCGACATAAAGGA 423
||||||||||||||||||||| || | ||||| ||||||||||||||||||||||| |
Sbjct 280 TCTGTTTACACAATGGGAACTGGAAGCT-CAGAGAATTATCTCAATTTCGACATAAAGAA 338
Query 424 TGCTCCTTTCGATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATGGCCCTGG 483
||||||||||||||||||| |||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct 339 TGCTCCTTTCGATGTTTATAGAACAGAACGTGGTGGTGAAGTTACTTATCATGGTCCTGG 398
Query 484 TCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTCATTGGTA 543
|||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||
Sbjct 399 TCAGCTAGTTATGTATCCTATAATCAATCTACGGAATCACAAAATGGATCTTCATTGGTA 458
Query 544 CCTCAGGATGCTTGAAGAGATT-GTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAG 602
| | |||| |||||| || | | || || ||||| ||||| || ||||| |||| || |
Sbjct 459 CTTAAGGAAGCTTGAGGA-AGTAGTTATTCGTGTTCTTTCTTCGGCTTTCGCCATCAATG 517
Query 603 CTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGTAGCCAAAAAGTGGCGGCGATAG 662
|||||||||| |||||||| ||||||||||||||||| | | ||||| ||||||||||||
Sbjct 518 CTTCTCGTCTCGACGGTTTTACTGGAGTTTGGGTTGGCAACAAAAAAATGGCGGCGATAG 577
Query 663 GTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACAACAGATC 722
|||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 578 GTATTCGTGTGTCGAAATGGATGACATATCATGGTCTAGCTCTTAATGTTACAACAGATT 637
Query 723 TAACACCATTCAACTGGATCGTTCCATGTGGGATTAAAGA-CCGAAAAGTTGGAAGCATA 781
||||||| || |||| || |||||||||||||| || || ||| ||||||||| ||
Sbjct 638 TAACACCCTTTAACTCCATAGTTCCATGTGGGAT-AAGGAACCGTGGGGTTGGAAGCGTA 696
Query 782 AAAGGCTTGCTTGAAGATGGAGAACACGG-AA-AGG-TTGATGATTTG-ACGTTGATTC- 836
|| || ||| |||| ||||||||||| || | | |||| |||||| | |||| ||
Sbjct 697 AAGGGTTTGATTGAGGATGGAGAACATTATAATAAGCTTGAAGATTTGCA-GTTG-TTAG 754
Query 837 ATGTAGCTCACGAGTCTTTACTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAA 896
|| ||||||| ||||| |||||||||||||||||||||||||| |||||||| || ||||
Sbjct 755 ATATAGCTCATGAGTCGTTACTAAAGGAATTCTCTGAAGTTTTTCAGCTTCAGATGGAAA 814
Query 897 AGCAAGCAGT 906
||||| ||||
Sbjct 815 AGCAAACAGT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5