BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491644
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-... 2346 0.0
AT4G31020.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 292 5e-78
> AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing
protein | chr4:15106644-15108636 FORWARD LENGTH=1472
Length=1472
Score = 2346 bits (1270), Expect = 0.0
Identities = 1413/1481 (95%), Gaps = 13/1481 (1%)
Strand=Plus/Plus
Query 1 TCTTTCCGATTTCTTCTTCTGTCTCTCTCTACTTGGTGGTTCGTCGACTTCGTAGAAGCA 60
||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 5 TCTTTCCGATTTCTTCTTCAGTCTCTCTCCAC----TGGTTCGTCGACTTCGTAGAAGCA 60
Query 61 AAATATGTTCTTGATTCGTCTCTCCCGCCATAATCCATCCTCTTTTACACTTCTCACGCG 120
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 61 AAAAATGTTCTTGATTCGTCTCTCCCGCCATAACCCATCATCTTTTACACTTCTCACGCG 120
Query 121 CCGCCTTCACGACCAAACAATTTCCTCGTCACGACTCCGAGACCTTTACAATTTTCAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCCTTCACGACCAAACAATTTCCTCGTCACGACTCCGAGACCTTTACAATTTTCAATC 180
Query 181 ACCGGCGCCTCCGTTGTCGTCGTCAGCCTCTGAAAATCCTGACTTTAACCAGAAGAACAA 240
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 181 ACCGCCGCCT---TTGTCGTCGTCAGCCTCCGAAAATCCTGACTTTAACCAGAAAAACAA 237
Query 241 TAATAAGAAGAAGCCAAAGCCGCAGTACCGTCCACCTTCTTCGCTGGAAGGTGTGAAGAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAATAAGAAGAAGCCAAAGCCGCAGTACCGTCCACCTTCTTCGCTGGAAGGTGTGAAGAC 297
Query 301 GGTTCACTCTGATCTTCCGTTTGATTTCCGGTTCAGTTACACAGAGAGTAGTTCAAATGT 360
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 298 GGTTCACTCTGATCTTCCGTTCGATTTCCGGTTCAGTTACACAGAGAGTTGCTCAAATGT 357
Query 361 GAGGCCAATTGGCTTGAGAGAGCCCAAGTATTCACCTTTTGGTCCTGACCGGTTGGACCG 420
||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 358 GAGGCCAATTGGCTTGAGAGAACCAAAGTATTCACCTTTTGGTCCTGATCGATTGGACCG 417
Query 421 GGAATGGACTGGTGTCTGTGCACCGGCGGTTGATCCAAAGGTAGAGTCTGTGGACGGAGT 480
||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 418 GGAATGGACCGGTGTCTGTGCGCCGGCGGTTAATCCAAAGGTAGAGTCTGTTGACGGAGT 477
Query 481 GGAGGATCCCAAGCTGGAAGAGAAAAGAAGGAAAGTGAGAGAGAAGATCCAAGGGGCATC 540
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 GGAGGATCCGAAGCTGGAAGAGAAAAGAAGGAAAGTGAGAGAGAAGATTCAAGGGGCATC 537
Query 541 ACTCACTGAAGCTGAAAGGAAATTTCTGGTGGAGCTGTGCCAGAGGAACAAAACTAAAAG 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 538 ACTCACTGAAGCTGAAAGGAAATTTCTGGTGGAGCTGTGTCAGAGGAACAAAACTAAAAG 597
Query 601 ACAAGTCAATCTTGGGCGAGATGGTTTGACTCACAATATGCTGAATGATATCTATAATCA 660
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 598 ACAAGTCAATCTTGGGCGAGATGGTTTGACTCATAATATGCTGAATGATGTCTATAATCA 657
Query 661 TTGGAAACATGCTGAAGCGGTACGGGTCAAATGTCTCGGAGTCCCGACTCTCGATATGAA 720
|||||||||||||||||| || |||||||||||||| |||||||| || |||||||||||
Sbjct 658 TTGGAAACATGCTGAAGCAGTTCGGGTCAAATGTCTTGGAGTCCCAACCCTCGATATGAA 717
Query 721 GAACGTTATATTCCACCTTGAGGACAAAACGTTTGGCCAGGTAGTCTCTAAACACTGTGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 GAACGTTATATTCCACCTTGAGGACAAAACGTTTGGCCAGGTAGTCTCTAAACACTCTGG 777
Query 781 TACTCTTGTGTTATATAGAGGGCGAAACTACGATCCCAAGAAAAGGCCTAAGATCCCATT 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TACACTTGTGTTATATAGAGGGCGAAACTACGATCCCAAGAAAAGGCCTAAGATCCCATT 837
Query 841 GATGTTGTGGAAACCTCATGAACCTGTGTATCCTAGGCTGATTAAAACAACAATTGATGG 900
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 838 GATGTTGTGGAAACCTCATGAACCAGTGTACCCTAGGCTGATTAAAACAACAATTGATGG 897
Query 901 TCTAAGCATTGATGAGACCAAAGCAATGAGAAAGAAAGGGCTAGCGGTTCCTGCCCTGAC 960
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 898 TCTAAGCATCGATGAGACCAAAGCAATGAGAAAGAAAGGGCTAGCTGTTCCTGCCTTGAC 957
Query 961 AAAACTCGCCAAGAATGGTTATTACGGTAGTCTTGTTCCAATGGTGAGAGATGCTTTCCT 1020
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAAACTTGCCAAGAATGGTTATTACGGTAGTCTTGTTCCAATGGTGAGAGATGCTTTCCT 1017
Query 1021 CGTGAGTGAATTGGTACGGATTGATTGCTTGGGACTAGATAGAAAGGATTACAAGAAAAT 1080
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1018 CGTGAGTGAATTAGTACGTATTGATTGCTTGGGACTAGAGAGAAAGGATTACAAGAAAAT 1077
Query 1081 TGGAGCAAAGCTTAGGGATTTGGTCCCTTGCATCCTGGTGACATTTAACAAGGAGCAGGT 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1078 TGGAGCAAAGCTTAGGGATTTGGTCCCTTGCATCCTGGTGACATTTGACAAGGAGCAGGT 1137
Query 1141 CGTGATTTGGAGAGGTAAAAACTATAAGCCACCCAAAGACGATGATGAATATTCGTCCTT 1200
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1138 CGTGATTTGGAGAGGTAAAGACTATAAGCCACCCAAAGAAGATGATGAATATTCGTCCTT 1197
Query 1201 CATTCATCGTGAATCTTCCATAGACTCCGATGGCGATTTAAGTTGTAGCAGAGGGGCTCA 1260
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1198 CATTCATCGTGAATCTTCCATAGACTCTGATGTCGATTTAAGTTGTAGCAGAGGGGCTCA 1257
Query 1261 AGATTCTCCAGACGAGACAACCAGAACCTAGGATGATTTAGTACTCTTGATCCCAGATGT 1320
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1258 AGATTCTCCTGACGAGACAACC------TAGGATGATTTAGTACTCTTGATCCCAGATGT 1311
Query 1321 ATAGTTATAATGTGAGAGTAATTTGTGGTAATGTACTTATTTGTCTCGCTAAGGAACACT 1380
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 1312 ATAGTTATAATGTGAGAGTATTTTGTGGTAATGTACTTAATTGTCTCGCTAAGGAGCACT 1371
Query 1381 AGATAGGTCGAAGAAAATGCTGATTACATCTTTTCTATGTTGCTTCTCCTACAAGTAATG 1440
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1372 AGATAGTTCGAAGGAAATGCTGATTACATCTTTTCTGTGTTGCTTCTCCTACAAGTAATG 1431
Query 1441 ATGTGTTACAGAAACCCCCAAACTTGGTGCTACATTTTTAC 1481
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1432 ATGTGTTACAGAAACCCCCAAACTTGAAGCTACATTTTTAC 1472
> AT4G31020.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:15108101-15110147 REVERSE LENGTH=1491
Length=1491
Score = 292 bits (158), Expect = 5e-78
Identities = 168/173 (97%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 1096 GGATTTGGTCCCTTGCATCCTGGTGACATTTAACAAGGAGCAGGTCGTGATTTGGAGAGG 1155
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1335 GGATTTGGTCCCTTGCATCCTGGTGACATTTGACAAGGAGCAGGTCGTGATTTGGAGAGG 1276
Query 1156 TAAAAACTATAAGCCACCCAAAGACGATGATGAATATTCGTCCTTCATTCATCGTGAATC 1215
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1275 TAAAGACTATAAGCCACCCAAAGAAGATGATGAATATTCGTCCTTCATTCATCGTGAATC 1216
Query 1216 TTCCATAGACTCCGATGGCGATTTAAGTTGTAGCAGAGGGGCTCAAGATTCTC 1268
|||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1215 TTCCATAGACTCTGATGTCGATTTAAGTTGTAGCAGAGGGGCTCAAGATTCTC 1163
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1070 TACAAGAAAATTGGAGCAAAGCTTAGGG 1097
||||||||||||||||||||||||||||
Sbjct 1491 TACAAGAAAATTGGAGCAAAGCTTAGGG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5