BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491646
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30996.1 | Symbols: | Protein of unknown function (DUF1068)... 1240 0.0
> AT4G30996.1 | Symbols: | Protein of unknown function (DUF1068)
| chr4:15101295-15102684 FORWARD LENGTH=911
Length=911
Score = 1240 bits (671), Expect = 0.0
Identities = 848/925 (92%), Gaps = 46/925 (5%)
Strand=Plus/Plus
Query 1 GTCGTTTTACTGTAGTTTCTCCGCGTTTGGTACATC-AC-C----A-CT-TG-------- 44
||||||||| |||||||||||||||||||||||||| || | | || ||
Sbjct 1 GTCGTTTTATTGTAGTTTCTCCGCGTTTGGTACATCAACACTTGTAGCTGTGTATCTTTC 60
Query 45 TAATTCTTCGTTTCTTTCGCTGACAGTGTCTT-CTTACACACTAATCACCATTGTTGCTG 103
||||||||| |||||||||||||||||| ||| || ||||||||||| | ||||||||||
Sbjct 61 TAATTCTTCCTTTCTTTCGCTGACAGTG-CTTGCTCACACACTAATCGCAATTGTTGCTG 119
Query 104 CACTT-CCGA--C----TC---CGA-TTCAGCATTTTGTTCTTCCGAAACGATGGCTCGT 152
|| || |||| | || ||| |||||||||||||||||||||| ||||| |||||
Sbjct 120 CA-TTGCCGACTCTGATTCGTTCGATTTCAGCATTTTGTTCTTCCGAAGCGATGCCTCGT 178
Query 153 CGATCTGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 212
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGATCCGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 238
Query 213 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACTCGTACCAAC 272
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 239 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACACGTGCCAAC 298
Query 273 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 358
Query 333 CCTGGGCTTGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTCAAACAA 392
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CCTGGGCTCGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTTAAACAA 418
Query 393 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 478
Query 453 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 538
Query 513 CAGTACCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 572
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAGTATCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 598
Query 573 GAGAGAGCCGAAGCTTTGTTGATCAAGGAGAGGAAGATCACTTCTTTGTGGGAGAAGAGA 632
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 GAGAGAGCTGAAGCTTTGTTGATCAAGGAGAGGAAGATTACTTCTTTGTGGGAGAAGAGA 658
Query 633 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTGAAG 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTAAAG 718
Query 693 AGTTTCTCTCTGAGAAGTCGAATTTTCGCAACTCTACTCAAGTAAAGGAAATTGTTTAAT 752
||||||||||||||| ||||||| || || ||||| || | |||||||||||| |
Sbjct 719 TGTTTCTCTCTGAGAAATCGAATTGTCACAGCTCTA---AA--A--GGAAATTGTTTAGT 771
Query 753 TGTCAAGGCAAAGTTCTATCTTCCACGTTTCTCTATATAT-GTA-GttttttttttGTTT 810
|||||||||||||| |||||||||||||||||||||||| ||| || |||||| ||||
Sbjct 772 TGTCAAGGCAAAGTCCTATCTTCCACGTTTCTCTATATACAGTATGTAGTTTTTT-GTTT 830
Query 811 TGCCCTTGGATCAGAATGTAGCTAAAGAAAGGCTTGGCCTTGTATTAACTTTTCTTCATA 870
|||||||| ||| |||||||||||||||||||| | |||||| ||||||| ||||||
Sbjct 831 TGCCCTTG-ATCGGAATGTAGCTAAAGAAAGGC----C-TTGTATCAACTTTTATTCATA 884
Query 871 TATAATTGTCCATTTCTCTACCATG 895
||||||||||||||||| ||| |||
Sbjct 885 TATAATTGTCCATTTCTTTACTATG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5