BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491651
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-150... 1759 0.0
> AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-15081657
REVERSE LENGTH=1230
Length=1230
Score = 1759 bits (952), Expect = 0.0
Identities = 1148/1238 (93%), Gaps = 31/1238 (3%)
Strand=Plus/Plus
Query 1 AACATTCATTTTCATTCTCcaaaacaaaaacaaacaaaaaaaaaTCAGAAGCCATGAACT 60
|||||||||||||||||| | | | | |||| ||||||||| |||||||||||||||
Sbjct 1 AACATTCATTTTCATTCT-C-ACTCCCCACCAAAAAAAAAAAAAACAGAAGCCATGAACT 58
Query 61 CTTCCTCTCTTTTAACACCTTCATCATCTTCTTCTCCACATCTCCAATCTCCTGCAACAT 120
| || |||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 59 CCTCGTCTCTTCTAACTCCTTCATCATCTCCTTCTCCACATCTTCAATCTCCTGCAACAT 118
Query 121 TCGACCACGATGATTTCCTCCACCAAATCTTCTCCTCCACTCCTTGGCCCTCCTCCGTCC 180
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 119 TCGACCACGATGATTTCCTCCACCACATCTTCTCCTCCACTCCTTGGCCCTCATCCGTTC 178
Query 181 TCGATGACGCTCCTCCCCCAACTTCCGATTGTGCCGCCGTCACTGGATTTCACCACCACG 240
|||| ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 179 TCGACGACACTCCTCCACCAACTTCCGATTGTGCCCCCGTCACTGGATTCCACCACCACG 238
Query 241 ATGCCGATTCAAGAAACCAGATCACTATGATTCCTTTGTCTCATAACCATCATAATGACG 300
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 239 ACGCCGATTCAAGAAACCAGATCACTATGATTCCTTTGTCACATAACCATCCTAATGACG 298
Query 301 CTCTCTTCAATGGCTTCTCCACCGGATCTCTCCCTTTCCACCTCCCTCAGGGATCGGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 CTCTCTTCAATGGCTTCTCCACCGGATCTCTCCCTTTCCACCTCCCTCAAGGATCGGGAG 358
Query 361 GTCAAACGC-AA---A--CGCAGGCGACGGCTTCAACAACTACCGGTGGTACGACGGTGC 414
||||||||| || | ||||||||||||| ||| | || ||||||||| | |||| ||
Sbjct 359 GTCAAACGCAAACGCAGTCGCAGGCGACGGCGTCAGCCACCACCGGTGGTGCAACGGCGC 418
Query 415 AGCCTCAGACTAAGCCTAAAGTTCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTA 474
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 AACCTCAGACAAAGCCTAAAGTCCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTA 478
Query 475 TCGCCGAACGGTTACGGAGAGAGAGAATAGCGGAGAGAATGAAATCTCTTCAAGAACTTG 534
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 479 TCGCCGAACGGTTACGGAGAGAGAGGATAGCGGAAAGAATGAAATCTCTTCAAGAACTTG 538
Query 535 TCCCTAATGGCAACAAGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCA 594
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCCTAATGGTAACAAGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCA 598
Query 595 AGTTCTTACAGCTCCAAGTCAAGGTATTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTG 654
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 AGTTCTTACAGCTCCAAGTCAAGGTACTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTG 658
Query 655 TCT-CTTCACAAATCTCTGAGGATGCCGGTGGGTCCCACGAAAACACCTCCTCCTCCGGC 713
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 -CTTCTTCTCAAATCTCTGAGGATGCCGGTGGATCCCACGAAAACACCTCCTCCTCCGGC 717
Query 714 GAGGCGAAGATGACGGAGCACCAAGTTGCAAAGCTGATGGAAGAGGACATGGGATCGGCC 773
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 718 GAGGCGAAGATGACGGAGCACCAAGTTGCAAAGCTAATGGAAGAGGACATGGGATCAGCC 777
Query 774 ATGCAGTATCTACAAGGCAAAGGTCTTTGCCTCATGCCCATCTCTTTAGCCACCACCATC 833
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 ATGCAATATCTACAAGGCAAAGGTCTTTGCCTCATGCCCATCTCGTTAGCCACCACCATC 837
Query 834 TCCACCGCCACGTGTCCTTCCCGTAACCCCTTCGTTAAAGATACCGGCGTTCCTTTGTCT 893
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 838 TCCACCGCCACGTGTCCTTCTCGTAGCCCCTTCGTTAAAGATACCGGCGTTCCTTTGTCT 897
Query 894 CCTAACCTATCCACTACAACAGTTGCTAACGGTAATGGTTCTTCGTTGGTCACCGTTAAA 953
||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 898 CCTAACCTATCCACTACAATAGTTGCTAACGGTAATGGCTCATCGTTGGTCACCGTTAAA 957
Query 954 GACGCTCCCTCCGTTTCCAAGCCGTGATAACGGC-A-------ATTTCGTTTTCCCtttt 1005
|||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 958 GACGCTCCCTCCGTTTCCAAGCCGTGATAACGGCCATTTGTCCATTTCATTTTCCCTTTT 1017
Query 1006 tttGGGTGG-AAAGAGAGAAAAA-GTTTAGAAGACGAAGACAAGTGGGATAGGTGGTTTT 1063
|| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1018 TT-GGGTGGGAAAGAGAGAAAAAAGTTTAGAAGACAAAGACAAGTGGGATAGGTGGTTTT 1076
Query 1064 GGTCAAAGTCTAGAAAGAGTAAGGTTGTGTTTTTGGATACGACACCGTATTTGCGTACGC 1123
||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1077 GGTCAAAGTTTAGAAAGAATAAGGTCGTGTTTTCGGATACGACACCGTATTTGCGTACAC 1136
Query 1124 TTTGGTTTTCTGTCTTTTACCTACTACAAACCACCCAATA-GCACACTCATGT-A--ATG 1179
||||||||||||||||| ||||||||||||||||||| || |||||||||||| | |||
Sbjct 1137 TTTGGTTTTCTGTCTTT-ACCTACTACAAACCACCCA-TAAGCACACTCATGTTATCATG 1194
Query 1180 TTTTCATGTTTCTTTTTGGTTTATAAAGTTATATCCTT 1217
|||| | ||| ||||||||||||||||||||||||||
Sbjct 1195 TTTT--T-TTT-TTTTTGGTTTATAAAGTTATATCCTT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5