BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491653
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | fatty acid desaturase... 2837 0.0
> AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | fatty acid desaturase
6 | chr4:15056975-15059794 REVERSE LENGTH=1771
Length=1771
Score = 2837 bits (1536), Expect = 0.0
Identities = 1700/1778 (96%), Gaps = 16/1778 (1%)
Strand=Plus/Plus
Query 1 AAGTCCAATTTTCTCAAGAAGGTTGAAGAGGTGAGGGCTCTTCACAGCCATTCAATCTCA 60
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTCCAATTTGCTGAAGAAGG-TGAAGAGGTGAGGGCTCTTCACAGCCATTCAATCTCA 59
Query 61 TAAAACATATTGCCGGAGAAA--CTCTC-GGGGGTCGCTTCTTCTGCATTTTCTCCGTCC 117
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 60 TAAGACATATTGCCGGAGAAACTCTCTCGGGGGGTCGCTTCTTCTGCATTTTCT--G--C 115
Query 118 TGT-CCAATGGCTTCCAGAATTGCTGATTCTCTCTTCGCCTTCACGGGCCCACAACAATG 176
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 116 T-TCCCAATGGCTTCCAGAATTGCTGATTCTCTCTTCGCCTTCACGGGCCCACAGCAATG 174
Query 177 TCTTCCTAGGGTTCCTAAGCTTGCAG---CTTCTGCTCGTGTTTCTCCTGGTATATATGC 233
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 175 TCTTCCTAGGGTTCCTAAGCTTGCTGCTTCTTCTGCTCGTGTTTCTCCTGGTGTATATGC 234
Query 234 TGTGAGGCCGATTGATCTTCTTTTAAAAGGAAGCACCCGTCGAAGTAGAAGATGTGTAGC 293
||||| ||||||||||||||| ||||||||| | || | |||||||||||||||||||||
Sbjct 235 TGTGAAGCCGATTGATCTTCTGTTAAAAGGACGAACTCATCGAAGTAGAAGATGTGTAGC 294
Query 294 TCCTGTGAAAAGGAGGATTGGATGTATCAAAGCGGTGGCTGTTCCAGTCGCACCGCCTTC 353
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 295 TCCTGTGAAAAGGAGAATTGGATGTATCAAAGCGGTGGCTGCTCCAGTTGCACCGCCTTC 354
Query 354 AGCTGACAGTGCAGAAGATAGGGAACAATTAGCAGAAAGCTATGGATTCAAACAAATTGG 413
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 355 AGCTGACAGTGCAGAAGACAGGGAACAGTTAGCAGAAAGCTATGGATTCAGACAAATTGG 414
Query 414 AGAAAATCTTCCTGATAATGTCACTTTAAAAGATATCATGGATACACTTCCCAAAGAGGT 473
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 AGAAGATCTTCCTGAGAATGTCACCTTAAAAGATATCATGGATACACTTCCCAAAGAGGT 474
Query 474 GTTCGAGATTGATGATTTGAAAGCATGGAAGTCTGTGTTGATATCTGTGACTTCTTACAC 533
||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 475 GTTTGAGATTGATGATCTGAAAGCTTTGAAGTCTGTGTTGATATCTGTGACTTCATACAC 534
Query 534 TTTGGGGCTCTTCATGATTGCAAAAGCGCCGTGGTATCTGCTACCGTTGGCTTGGGCATG 593
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 TTTGGGGCTCTTCATGATTGCAAAATCGCCGTGGTATCTGCTACCGTTGGCTTGGGCATG 594
Query 594 GACAGGAACTGCAATTACCGGGTTCTTTGTGATAGGTCATGATTGTGCACATAAGTCATT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACAGGAACTGCAATTACCGGGTTCTTTGTGATAGGTCATGATTGTGCACATAAGTCATT 654
Query 654 CTCAAAGAACAAATTGGTGGAAGACATTGTGGGTACTCTCGCCTTCCTACCACTTGTCTA 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTCAAAGAACAAATTGGTGGAAGACATTGTGGGTACTCTCGCCTTCCTACCACTTGTCTA 714
Query 714 CCCATATGAGCCTTGGCGGTTTAAGCACGACCGTCATCACGCCAAAACCAACATGTTAGT 773
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 CCCATATGAGCCATGGCGGTTTAAGCACGACCGCCATCACGCCAAAACCAACATGTTAGT 774
Query 774 TCATGACACAGCTTGGCAGCCAGTTCCACCAGAGGAGTTTGATTCATCACCCGTGCTGCG 833
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
Sbjct 775 TCATGACACAGCTTGGCAGCCAGTTCCGCCAGAGGAGTTTGAGTCATCACCCGTGATGAG 834
Query 834 AAAGGCAATCATTTTTGGATATGGGCCAATTAGACCTTGGTTGTCCATAGCTCACTGGGT 893
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 835 AAAGGCAATCATTTTTGGATATGGCCCAATTAGACCTTGGTTGTCCATAGCTCACTGGGT 894
Query 894 GAACTGGCACTTCAATCTGAAAAAGTTCAGAGCGAGCGAGGTGAATAGGGTGAAGATAAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAACTGGCACTTCAATCTGAAAAAGTTCAGAGCGAGCGAGGTGAATAGGGTGAAGATAAG 954
Query 954 TTTGGCTTGTGTTTTCGCCTTCATGGCCGTTGGGTGGCCACTGATCGTATACAAAGTTGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTTGGCTTGTGTTTTCGCCTTCATGGCCGTTGGGTGGCCACTGATCGTATACAAAGTTGG 1014
Query 1014 TTTGTTGGGATGGGTAAAATTCTGGTTAATGCCGTGGTTGGGCTATCACTTCTGGATGAG 1073
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1015 TATATTGGGATGGGTAAAATTCTGGTTAATGCCATGGTTGGGCTATCACTTCTGGATGAG 1074
Query 1074 CACATTCACAATGGTTCATCATACGGCTCCACACATTCCATTCAAGCCTGCGGATGAGTG 1133
|||||||||||||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 1075 CACATTCACAATGGTTCATCATACGGCTCCGCATATACCTTTCAAGCCTGCGGATGAGTG 1134
Query 1134 GAACGCGGCTCAGGCCCAGCTGAATGGAACTGTTCATTGTGATTACCCTAGTTGGATTGA 1193
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1135 GAACGCGGCTCAGGCCCAGCTGAATGGAACTGTTCATTGTGACTACCCTAGTTGGATTGA 1194
Query 1194 AATTCTCTGCCATGATATCAACGTTCACATCCCGCATCATATCAGCCCAAGAATACCAAG 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1195 AATTCTCTGCCATGATATCAACGTTCACATCCCGCATCATATTAGCCCAAGAATACCGAG 1254
Query 1254 CTACAATCTCCGTGCAGCTCATGAGTCTATACAAGAGAACTGGGGAAAGTATACAAACTT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CTACAATCTCCGTGCAGCTCATGAGTCTATACAAGAGAACTGGGGAAAGTATACAAACTT 1314
Query 1314 GGCTACATGGAACTGGCGCTTGATGAAAACGATAATGACTGTGTGTCATGTCTATGACAA 1373
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1315 GGCTACATGGAACTGGCGATTGATGAAGACGATAATGACTGTGTGTCATGTCTATGACAA 1374
Query 1374 AGAGGAGAACTACATTCCTTTTGACCGGTTAGCCCCTGAAGAATCTCAGCCAATAACCTT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AGAGGAGAACTACATTCCTTTTGACCGGTTAGCCCCTGAAGAATCTCAGCCAATAACCTT 1434
Query 1434 CCTCAAGAAAGCAATGCCTAACTACACAGCCTGATTCGCCCTGGTCTCGAACTGGTCTTT 1493
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 1435 CCTCAAGAAAGCAATGCCTAACTACACAGCCTGATTCGCCATGGTCTCAAACTAGTCTTT 1494
Query 1494 TGAAATCTCAATATCTTTTTGCAGTCGCGGATGTTATATGTAAGCTTTTCGAGCGATAAG 1553
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||
Sbjct 1495 TGAAATCTCAATATCTTTTTGCAGTCGCCGATGTTATATGTAAGCTTTCCAAGCGATGAG 1554
Query 1554 CTTCTCTAACACTTCACCAACGCTTTATACTGTTAtttt-tttCCAATCTTATCAGAAGA 1612
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1555 CTTCTCTAACACTTCACCAACGCTTTATACTGTTATCTTCTTTCCAATCTTATCAGAAGA 1614
Query 1613 GAGAAACTGGTCAAATTATCTCAGC-ACTTGCAATTCTTTTATCAGTTTCTTAGCTATAA 1671
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1615 GAGAAACTGGTCAAATTATCTCAGCGA-TTGCAATTCTTTTATCAGTTTCTTAGCTATAA 1673
Query 1672 GAAGATTAAACAGTCTACATAGTTTGCAATGTACTGTAGTGTGATGAAAACTTAGTAGAT 1731
||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1674 GAAGATTGAACAGTCTATATAGTTTGCAATGTACTGTAATGTGATGAAAATTTAGTTGAT 1733
Query 1732 GAGAATCTTTGAAGATATATACATCATCTACTTACTGT 1769
||||||||||||||||||| ||||||||| ||||||||
Sbjct 1734 GAGAATCTTTGAAGATATAAACATCATCTTCTTACTGT 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87499549935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5