BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491662
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30880.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 713 0.0
> AT4G30880.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:15035207-15035843
FORWARD LENGTH=445
Length=445
Score = 713 bits (386), Expect = 0.0
Identities = 424/442 (96%), Gaps = 3/442 (1%)
Strand=Plus/Plus
Query 1 CTCACAAGATTCAAACTAAAATGGTGATCGGGTCTCGTGCTTTGATTGGTCTAATAATGA 60
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 3 CTCACTAGATTCAAACTAAAATGGTGATCGGTTCTCGTGCTTTGATTGGTCTAACAATGA 62
Query 61 TCCTTGTGATCTCAGGAACACTTCTAGTTCCAGGGCAAGGAACGTGCCAAGGAGACATCG 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 63 TCCTTGTGATCTCAGGAACACTACCAGTTCCAGGGCAAGGAACGTGCCAAGGAGACATCG 122
Query 121 AAGGTCTGATGAAAGAATGCGCGGTCTACGTGCAGCGTCCAGGCCCAAAGGTGAACCCGT 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 123 AAGGTCTGATGAAAGAATGCGCCGTCTACGTGCAGCGTCCAGGCCCAAAGGTAAACCCGT 182
Query 181 CCGAAGCATGCTGCAGAGTCGTTAAGAGATCAGATATCCTTTGCGCTTGTGGCCGTATCA 240
||||||| ||||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 183 CCGAAGCGTGCTGCAGAGTGGTTAAGAGATCAGACATCCCTTGCGCATGTGGCCGTATCA 242
Query 241 CAGCTTCAGTGCAGA-AAATGATAGACATGGATAAGGTTGTTCATGTCACTGCCTTTTGT 299
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CAGCTTCGGTGCA-ACAAATGATAGACATGGATAAGGTTGTTCATGTCACTGCCTTTTGT 301
Query 300 GGGAAGCCTCTCGCTCATGGTACCAAGTGTGGAAGTTACGTTGTGCCATGAGATTTGGGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGGAAGCCTCTCGCTCATGGTACCAAGTGTGGAAGTTACGTTGTGCCATGAGATTTGGGA 361
Query 360 CCAGAACTTGAGAGCAAAGGGTTTGAAA-GTACTCTTGTAATCTCTAATATATTGAATGA 418
||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 362 CCAGAACTTGAGAGCTAAGGGTTTGAAATGTACTCTTGTAATCTCTAATATGTTGAATGA 421
Query 419 AATAAATTTATTTTCCTTGTTT 440
||||||||||||||||||||||
Sbjct 422 AATAAATTTATTTTCCTTGTTT 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5