BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491663
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonucleas... 3371 0.0
AT5G39770.1 | Symbols: | Restriction endonuclease, type II-lik... 547 1e-154
> AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonuclease,
type II-like superfamily protein | chr4:15028427-15032634
FORWARD LENGTH=2312
Length=2312
Score = 3371 bits (1825), Expect = 0.0
Identities = 2010/2101 (96%), Gaps = 6/2101 (0%)
Strand=Plus/Plus
Query 1 CGAACCAAAGATCAAACCTTTGCGAGACAATTTCCCTCTTTCTAGGCAACGAGTTTATCC 60
||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||
Sbjct 42 CGAACCAAAGATCAAACCTTTGCGAGAGAATTTCCCTCTTTTTCGGCAACGAGTATATCC 101
Query 61 AATCATCAAGGAATTTGATGATCGTTTGATAAATTGAAACTCTTTGGAGTGGGTAGTGAT 120
||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 102 AATCAGCAAGGAATTTTATGATCGCTTGATAAATTGAAACTATTTGGAGTGGGTAGTGAT 161
Query 121 GGATGACGAGAGACGGGTACTGTGTCCTGAGAACCAAGATTTAGCGGCTTATGTGTTGCA 180
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 162 GGATGACGAGAGACGGGTACTGTGCCCTGAGAACCGAGGTTTAGCGGCTTATGTGTTGCA 221
Query 181 GAAGAAGCAAGAACACGCAGAAAAACCCAAAGGTTTGTCGGAAAATCTGGAGAGGACATT 240
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 222 GAAGAAGCAAGAATACGCAGAAAAGCCCAAAGGCTTGTCGGAAAATCTGGAGAGGACATT 281
Query 241 TGTTAAGGCGTATAGGAATGTCTGCGACGCCAAGGATCCCATTAACACACTCAAAGACTT 300
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGTTAAGGGGTATAGGAGTGTCTGCGACGCCAAGGATCCCATTAACACACTCAAAGACTT 341
Query 301 GTCGCAGATCAAGGGCTTTGGCAAGTGGATGGTTAAGCTCATGAAAGGATATTTTGATAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GTCGCAGATCAAGGGCTTTGGCAAGTGGATGGTTAAGCTCATGAAAGGATATTTTGATAC 401
Query 361 TGGTGCTCAAAGTTCTGAGCAAGAAGATTTACCTGATAGGCGTGCTGGGAAAAAGGCTAA 420
|| || | |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 402 TGCTGTTGAAAGTTCTGAGCAAGAAGATTTACCTGATAATCGTGCTGGGAAAAAGGCCAA 461
Query 421 TGGaaaaaaaCGCTACATTCCGCAAAGAAATTCTGTGGGCTATGCATTACTAATAACGTT 480
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 462 TGGAAAAAAACGGTACATTCCGCAAAGAAATTCAGTGGGATATGCATTACTAATAACGTT 521
Query 481 GCACAGGAGGACTACAAATGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGC 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GCACAGAAGGACTACAAATGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGC 581
Query 541 TGACGCTAGTGGGCTCTCACACTCTCCTGTTGGGCCAGAGAAAGGAAAAGGGAAAGCAGG 600
|||||| | |||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 582 TGACGCGAATGGGCTATCACACGCTCCTGTTGGGCCAGAGAAAGGGAAAGGGAAAGCAGG 641
Query 601 ACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACACTTATACA 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 642 ACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACTCTTATACA 701
Query 661 GAAGGGATTGGTGGTGAAATCTAGCAACCCAGCAAAGTACATGCTGACAGTAGAAGGTCG 720
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 702 GAAGGGATTAGTGGTGAAATCTAGCAACCCAGCAAAGTACATGCTGACAGTTGAAGGTCG 761
Query 721 GGAAGTTGCAAATGAATGTATCGTGCGATCTGGATTACCTAATTCAGTTGACATCTTATC 780
||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 762 GGAAGTTGCAAATGAGTGTATCCTGCGATCTGGATTACCTGATTCAGTTGATATCTTATC 821
Query 781 TGATGATGGAATTTATCCTACACCGCAAGCACAGAAAACACCTAACCAAAATCCTACCTG 840
|| ||||| ||| ||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 822 TGTTGATGAAATGGATCCTACACCGCAAGCAAAGAAAACACCTAATCAAAATCCCACCTG 881
Query 841 TTCTTTTACCATGAGAGAAGAACAGCCATATGTCGATCCCAGATCTAGGGCACAATCAGC 900
||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 882 TTCGTTTACCATGAGAGAAGAACTTCCATATGTCGATCCAAGATGTAGGGCACAATCAGC 941
Query 901 CATTCCAAGCGATATTCTTGAAAAGTTTACACCGTTTGGTTATTCAAAGGAACAAGTCGT 960
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 942 CATTCCAAGCGATATTCTTGAAAAGTTTACTCCGTTTGGTTATTCGAAGGAACAAGTCGT 1001
Query 961 TGCTGCATTCAGAGAGGTTTCAGATGGATCTGGGGACAAAGATCCATCAACTCTCTGGCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGCTGCATTCAGAGAGGTTTCAGATGGATCTGGGGACAAAGATCCATCAACTCTCTGGCT 1061
Query 1021 CTCTGTAATGTGCCATCTTCGTCAAGCAGAGGTTTATAATTCCTGTCCGGACTCAAGAAA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1062 CTCTGTAATGTGCCATCTTCGTCAAGCAGAGGTTTATAATTCCTGTCCGGACTCGAGAAA 1121
Query 1081 TAGAAGAAAAG-ATTCATCAGGACCTTCTAAATCACAAACTCGTCAAGTTGATCTTGAGG 1139
||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1122 TAGTA-AAAAGGATTCATCAGGACCTTTTAAATCACAAATTCGTCAAGTTGATCTTGAGG 1180
Query 1140 GATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGACCCACCTTAAATCCATGTACAT 1199
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1181 GATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGATCCACCTTAAATCCATGTTCAT 1240
Query 1200 CCGGATCGAGTCATGCTGTGAAAGCCTGCTCATCTTCTTTGGTATCAGATGGAACCAAAG 1259
| || || |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1241 CAGGTTCAAGTCATGCTGTGAAAGCCTGCTCATCTTCTTTGGCATCAGATGGAACCAAAG 1300
Query 1260 GAATAACAAATGTTCCACGCCTCCCTCCTCTTCAATTTGGAGAAACGTTTGAGGAAGCAT 1319
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GAATAACAAATATTCCACGCCTCCCTCCTCTTCAATTTGGAGAAACGTTTGAGGAAGCAT 1360
Query 1320 ATGATGTGATCTTGATATTGGATGATCGAGAAAAGTTTGCCACGAAGGGATCACGATCCA 1379
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 1361 ATGATGTGATCTTGATACTGGATGATCGAGAAAAGTTTGCCACCAAAGGATCACGATCCA 1420
Query 1380 GGAATATAGTTGATAACATATGCTCTGAATTCAATATCAAGATTGAGGTTAGACGATTAC 1439
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1421 GGAATATAGTTGAAAACATATGCTCTGAATTCAACATCAAGATTGAGGTTAGACGATTAC 1480
Query 1440 CAGTTGGGGATTGTATCTGGATTGCTCGGCATAAGTACTTTGAGACTGAATATGTTCTGG 1499
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1481 CAGTCGGGGATTGTATATGGATTGCTCGGCATAAGTACCTTGAGACTGAATATGTTCTAG 1540
Query 1500 ACTTTATTGCTGAGAGGAAGAACGTGGATGATATGCGCTCATCAATTAGAGATAATCGCT 1559
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1541 ACTTTATTGCTGAGAGGAAGAACGTTGATGATATGCGCTCATCAATTAGAGATAATCGCT 1600
Query 1560 ACAGAGACCAAAAACTTAGACTTCAGAGATCGGGATTCAAGAAGCTCATATATATTCTTG 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1601 ACAGAGACCAAAAACTTAGACTTCAGAGATCGGGATTCAAGAAGCTCATATACATTCTTG 1660
Query 1620 AAGGGGATCCAAACCATTCTGATGCAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 AAGGGGATCCAAACCATTCTGATGCAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAG 1720
Query 1680 AGATTCTGGAGGGATTTGATGTGCTGAGGACACAAGGGCTGGGTGAGACGCTAAGGAAAT 1739
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1721 AGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAAT 1780
Query 1740 ACGGCTACCTCACGAAATCAATATATCAATACTACAAGTTACGGGTGAATGATAATGACC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 ACGGCTACCTCACGAAATCAATATATCAATACTACAAGTTACGGGTGAATGATAATGACC 1840
Query 1800 AGAGCAAAGTCGCAGCCTCGTGTCCTTCTTTTGATAGTTTTGTCAAAAGGTGTCAAGACC 1859
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AGAGCAAAGGCGCAGCCTCATGTCCTTCTTTTGATAGTTTTGTCAAAAGGTGTCAAGACC 1900
Query 1860 TTGATAAAATGACAATCAGCGATGTATTTGCCATTCAGCTTATGCAGATCCCGCAGGTAA 1919
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1901 TTGATAAAATGACAATCAGCGATGTATTTGCCATTCAGCTAATGCAGGTCCCGCAGGTAA 1960
Query 1920 CGGAGGAAATTGCCATAGCGGTTCTTGATA-GTTACCCAACGCTTTTGTCTCTTGCTTCT 1978
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1961 CGGAGGAAATTGCCATAGCGGTTCTTGATATGT-ACCCAACGCTTTTGTCTCTTGCTTCT 2019
Query 1979 GCGTATTCTCATCTAGAAGG-GAATGTCTCTGCGCAAGAAGAGATGTTGAGAAATAGAAG 2037
|| |||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 2020 GCCTATTCTCATCTAGAAGCAGA-TGTCTCGGCGCAAGAAGAGATGTTGAGAAATAGAAG 2078
Query 2038 TAACAATGTAATCTGTGCATCAGCTAGTAAGAATATATTCAAGTTAGTTTGGGGTGAATG 2097
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 CAACAATGTAATATGTGCATCAGCTAGTAAGAATATATTCAAGTTAGTTTGGGGTGAATG 2138
Query 2098 A 2098
|
Sbjct 2139 A 2139
> AT5G39770.1 | Symbols: | Restriction endonuclease, type II-like
superfamily protein | chr5:15919241-15927549 REVERSE LENGTH=3819
Length=3819
Score = 547 bits (296), Expect = 1e-154
Identities = 462/540 (86%), Gaps = 20/540 (4%)
Strand=Plus/Plus
Query 206 CCCAAAGGTTTGTCGGAAAATCTGGAGAGGACATTTGTTAAGGCGTATAGGAATGTCTGC 265
||||| |||||||| ||| ||| ||||| || ||||||||| || || || |||||||||
Sbjct 2284 CCCAAGGGTTTGTCCGAATATCAGGAGATGAAATTTGTTAAAGCCTACAGAAATGTCTGC 2343
Query 266 GACGCCAAGGATCCCATTAACACACTCAAAGACTTGTCGCAGATCAAGGGCTTTGGCAAG 325
|||||||||||| | ||| | || ||||||||||||||| |||||||||| |||||||||
Sbjct 2344 GACGCCAAGGATTCAATTGATACCCTCAAAGACTTGTCGAAGATCAAGGGATTTGGCAAG 2403
Query 326 TGGATGGTTAAGCTCATGAAAGGATATTTTGATACTGGTGCT-CAAAGTTCTGAGCAAGA 384
| ||||||||||||||| |||||||||||| |||||||||| | |||||| ||||||||
Sbjct 2404 TATATGGTTAAGCTCATGCAAGGATATTTTGTTACTGGTGCTGC-AAGTTCCGAGCAAGA 2462
Query 385 AGATTTACCT-GATAGGCGTGCTGGGAAAAAGGCTAATGGa-aaaaaaCGCTACATTCCG 442
|| ||||||| || | ||||||||||||||||| || ||| | || || |||| |||
Sbjct 2463 AGCTTTACCTGGA-AATCGTGCTGGGAAAAAGGCCAAGGGATCAGAACCG-TACAAGCCG 2520
Query 443 CAAAGAAATTCTGTGGGC-TATGCATTACTAATAACGTTGCACAGG---AGGACTACAAA 498
||||||||| ||| ||| ||||| |||| |||| ||||||||| | |||| ||||
Sbjct 2521 CAAAGAAATACTG-CGGCTTATGCGTTAC---TAACATTGCACAGGTTTAAGACTGCAAA 2576
Query 499 TGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGCTGACGCTAGTGGGCTCTC 558
||||||| |||| |||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 2577 TGGGAAAAAATTGATGCGTAAACAAAAGCTTATGGACGCTGCTGACGCTAGTGGGCTCTC 2636
Query 559 ACACT-CTCCTGTTGGGCCAGAGAAAGGAAAAGGGAAAGCAGGACTTGG-ACACTCTAAG 616
||| | | || ||| |||||||||||||||||| |||||||||||||| || |||||||
Sbjct 2637 ACA-TGTTTCTATTGCGCCAGAGAAAGGAAAAGGAAAAGCAGGACTTGGAAC-CTCTAAG 2694
Query 617 AGGGAGTGGTATAGTGGATGGAGCTGCATGACCACACTTATACAGAAGGGATTGGTGGTG 676
|||||||||||||| ||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct 2695 AGGGAGTGGTATAGCGGATGGAGCTGCATGTCGAAACTTATAGAGAAGGGATTGGTGGTG 2754
Query 677 AAATCTAGCAACCCAGCAAAGTACATGCTGACAGTAGAAGGTCGGGAA-GTTGCAAATGA 735
|||| |||||||||||||||||||||||||||||| ||||| ||| || || ||| ||||
Sbjct 2755 AAATTTAGCAACCCAGCAAAGTACATGCTGACAGTTGAAGGCCGG-AATGTAGCAGATGA 2813
Score = 488 bits (264), Expect = 8e-137
Identities = 390/448 (87%), Gaps = 19/448 (4%)
Strand=Plus/Plus
Query 1467 GGCATAAGTA-CTTTGAGACTGAATATGTTCTGGACTTTATTGCTGAGAGGAAGAACGTG 1525
|||||||||| | ||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 3125 GGCATAAGTACCAACAAGA-TGAATATGTTCTCGACTTTATTGTTGAGAGGAAGAACGTT 3183
Query 1526 GATGATATGCGCTCATCAATTA-GAGATAATCGCTAC-AGAGACCAAAAACTTAGACTTC 1583
|||||||||||||| ||||||| | |||||||||||| || |||||||||||||||||||
Sbjct 3184 GATGATATGCGCTCGTCAATTATG-GATAATCGCTACAAG-GACCAAAAACTTAGACTTC 3241
Query 1584 AGAGATCGGGATTCAAGAAGCTCATATATATTCTTGAAGGGGATCCAAACCATTCTGATG 1643
||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| | |
Sbjct 3242 AGAGATCGGGAATCAAAAAGCTGATATACATTCTTGAAGGGGATCCAAACCAGTCT-AAG 3300
Query 1644 -CAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAGAGAT-TCTGG-AGGGATTTGATG 1700
| ||||||||||||||||| ||||||||||| || ||||| | ||| |||| |||||||
Sbjct 3301 ACTGCAGAAAGCATTAAAACGGCTTGTTTCACTACGGAGATAT-TGGAAGGG-TTTGATG 3358
Query 1701 TGCTGAGGACACAA-GGGCTGGGTGAGACGCTAAGGAAATACGGCTACCTCACGAAATCA 1759
|| |||| ||| || || ||||||||||||||||| |||||||| || ||||| |||||
Sbjct 3359 TGGTGAGAACA-AACGGACTGGGTGAGACGCTAAGAAAATACGGTTATCTCACTAAATCG 3417
Query 1760 ATATATCAATACTACAAGTTACGGGTGAATGATAATGACCAGAGCAAAGTCGCAGCCTCG 1819
||||| ||||||||||||| | |||||||| |||||||||| ||||| || | ||||
Sbjct 3418 ATATACCAATACTACAAGTCGCTGGTGAATG---ATGACCAGAGGAAAGTTGCGGACTCG 3474
Query 1820 TGTCCTTCTTTTGATAG-TTTTGTCAAAAGGTGTCAAGACCTTGATAAAATGACAATCAG 1878
|||||||||| ||| | ||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 3475 TGTCCTTCTTACGAT-GATTTTGTCCAAAGGTGTCCAGACCTTGGTAAAATGACAATCAG 3533
Query 1879 CGATGTATTTGCCATTCAGCTTATGCAG 1906
||||||||||||||||||||||||||||
Sbjct 3534 CGATGTATTTGCCATTCAGCTTATGCAG 3561
Score = 202 bits (109), Expect = 1e-50
Identities = 206/249 (83%), Gaps = 22/249 (9%)
Strand=Plus/Plus
Query 1122 GTCAAGTTGATCTTGAGGGATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGACCCA 1181
|||||||||||||||||||||||||||||||||||||||| |||| ||| | | || |
Sbjct 2897 GTCAAGTTGATCTTGAGGGATCTCGTGCTAAGAAGTTCCGTTCTT-CAA-G-T---CC-A 2949
Query 1182 CCTTAAATCCATGTACATCCGGATCGAGTCATGC-TGTGAAAGCCTGCTCATCTTCTTTG 1240
|| || | ||| | | || ||||| | |||||||||||||||||||||||
Sbjct 2950 TGTTCT-TCTA-GTA--T----A---AGCCATGCCT-TGAAAGCCTGCTCATCTTCTTTG 2997
Query 1241 GTATCAGATGGAACCAAAGGAATAACAAATGTTCCACGCCTCCCTCCTCTTCA-ATTTGG 1299
| ||| ||||||||| ||||| |||||| | |||||||||| || |||||| | ||| ||
Sbjct 2998 GCATCTGATGGAACCGAAGGAGTAACAACTATTCCACGCCTTCCACCTCTT-AGATTCGG 3056
Query 1300 AGAAACGTTTGAGGAAGCATATGATGTGATCTTGATATTGGATGATCGAGAAAAGTTTGC 1359
|||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 3057 AGAAGCGTTTGAGGAAGTATATGATGTGATCTTGATACTGGATGATCGAGAACAGTTTGC 3116
Query 1360 CACGAAGGG 1368
||| |||||
Sbjct 3117 CACTAAGGG 3125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5