BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491663 Length=2101 Score E Sequences producing significant alignments: (Bits) Value AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonucleas... 3371 0.0 AT5G39770.1 | Symbols: | Restriction endonuclease, type II-lik... 547 1e-154 > AT4G30870.1 | Symbols: ATMUS81, MUS81 | Restriction endonuclease, type II-like superfamily protein | chr4:15028427-15032634 FORWARD LENGTH=2312 Length=2312 Score = 3371 bits (1825), Expect = 0.0 Identities = 2010/2101 (96%), Gaps = 6/2101 (0%) Strand=Plus/Plus Query 1 CGAACCAAAGATCAAACCTTTGCGAGACAATTTCCCTCTTTCTAGGCAACGAGTTTATCC 60 ||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||| Sbjct 42 CGAACCAAAGATCAAACCTTTGCGAGAGAATTTCCCTCTTTTTCGGCAACGAGTATATCC 101 Query 61 AATCATCAAGGAATTTGATGATCGTTTGATAAATTGAAACTCTTTGGAGTGGGTAGTGAT 120 ||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||||| Sbjct 102 AATCAGCAAGGAATTTTATGATCGCTTGATAAATTGAAACTATTTGGAGTGGGTAGTGAT 161 Query 121 GGATGACGAGAGACGGGTACTGTGTCCTGAGAACCAAGATTTAGCGGCTTATGTGTTGCA 180 |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 162 GGATGACGAGAGACGGGTACTGTGCCCTGAGAACCGAGGTTTAGCGGCTTATGTGTTGCA 221 Query 181 GAAGAAGCAAGAACACGCAGAAAAACCCAAAGGTTTGTCGGAAAATCTGGAGAGGACATT 240 ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 222 GAAGAAGCAAGAATACGCAGAAAAGCCCAAAGGCTTGTCGGAAAATCTGGAGAGGACATT 281 Query 241 TGTTAAGGCGTATAGGAATGTCTGCGACGCCAAGGATCCCATTAACACACTCAAAGACTT 300 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TGTTAAGGGGTATAGGAGTGTCTGCGACGCCAAGGATCCCATTAACACACTCAAAGACTT 341 Query 301 GTCGCAGATCAAGGGCTTTGGCAAGTGGATGGTTAAGCTCATGAAAGGATATTTTGATAC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 GTCGCAGATCAAGGGCTTTGGCAAGTGGATGGTTAAGCTCATGAAAGGATATTTTGATAC 401 Query 361 TGGTGCTCAAAGTTCTGAGCAAGAAGATTTACCTGATAGGCGTGCTGGGAAAAAGGCTAA 420 || || | |||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 402 TGCTGTTGAAAGTTCTGAGCAAGAAGATTTACCTGATAATCGTGCTGGGAAAAAGGCCAA 461 Query 421 TGGaaaaaaaCGCTACATTCCGCAAAGAAATTCTGTGGGCTATGCATTACTAATAACGTT 480 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 462 TGGAAAAAAACGGTACATTCCGCAAAGAAATTCAGTGGGATATGCATTACTAATAACGTT 521 Query 481 GCACAGGAGGACTACAAATGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGC 540 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 GCACAGAAGGACTACAAATGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGC 581 Query 541 TGACGCTAGTGGGCTCTCACACTCTCCTGTTGGGCCAGAGAAAGGAAAAGGGAAAGCAGG 600 |||||| | |||||| |||||| |||||||||||||||||||||| |||||||||||||| Sbjct 582 TGACGCGAATGGGCTATCACACGCTCCTGTTGGGCCAGAGAAAGGGAAAGGGAAAGCAGG 641 Query 601 ACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACACTTATACA 660 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 642 ACTTGGACACTCTAAGAGGGAGTGGTATAGTGGATGGAGCTGCATGACCACTCTTATACA 701 Query 661 GAAGGGATTGGTGGTGAAATCTAGCAACCCAGCAAAGTACATGCTGACAGTAGAAGGTCG 720 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 702 GAAGGGATTAGTGGTGAAATCTAGCAACCCAGCAAAGTACATGCTGACAGTTGAAGGTCG 761 Query 721 GGAAGTTGCAAATGAATGTATCGTGCGATCTGGATTACCTAATTCAGTTGACATCTTATC 780 ||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||| Sbjct 762 GGAAGTTGCAAATGAGTGTATCCTGCGATCTGGATTACCTGATTCAGTTGATATCTTATC 821 Query 781 TGATGATGGAATTTATCCTACACCGCAAGCACAGAAAACACCTAACCAAAATCCTACCTG 840 || ||||| ||| ||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 822 TGTTGATGAAATGGATCCTACACCGCAAGCAAAGAAAACACCTAATCAAAATCCCACCTG 881 Query 841 TTCTTTTACCATGAGAGAAGAACAGCCATATGTCGATCCCAGATCTAGGGCACAATCAGC 900 ||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| Sbjct 882 TTCGTTTACCATGAGAGAAGAACTTCCATATGTCGATCCAAGATGTAGGGCACAATCAGC 941 Query 901 CATTCCAAGCGATATTCTTGAAAAGTTTACACCGTTTGGTTATTCAAAGGAACAAGTCGT 960 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 942 CATTCCAAGCGATATTCTTGAAAAGTTTACTCCGTTTGGTTATTCGAAGGAACAAGTCGT 1001 Query 961 TGCTGCATTCAGAGAGGTTTCAGATGGATCTGGGGACAAAGATCCATCAACTCTCTGGCT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 TGCTGCATTCAGAGAGGTTTCAGATGGATCTGGGGACAAAGATCCATCAACTCTCTGGCT 1061 Query 1021 CTCTGTAATGTGCCATCTTCGTCAAGCAGAGGTTTATAATTCCTGTCCGGACTCAAGAAA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1062 CTCTGTAATGTGCCATCTTCGTCAAGCAGAGGTTTATAATTCCTGTCCGGACTCGAGAAA 1121 Query 1081 TAGAAGAAAAG-ATTCATCAGGACCTTCTAAATCACAAACTCGTCAAGTTGATCTTGAGG 1139 ||| | ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1122 TAGTA-AAAAGGATTCATCAGGACCTTTTAAATCACAAATTCGTCAAGTTGATCTTGAGG 1180 Query 1140 GATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGACCCACCTTAAATCCATGTACAT 1199 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1181 GATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGATCCACCTTAAATCCATGTTCAT 1240 Query 1200 CCGGATCGAGTCATGCTGTGAAAGCCTGCTCATCTTCTTTGGTATCAGATGGAACCAAAG 1259 | || || |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1241 CAGGTTCAAGTCATGCTGTGAAAGCCTGCTCATCTTCTTTGGCATCAGATGGAACCAAAG 1300 Query 1260 GAATAACAAATGTTCCACGCCTCCCTCCTCTTCAATTTGGAGAAACGTTTGAGGAAGCAT 1319 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 GAATAACAAATATTCCACGCCTCCCTCCTCTTCAATTTGGAGAAACGTTTGAGGAAGCAT 1360 Query 1320 ATGATGTGATCTTGATATTGGATGATCGAGAAAAGTTTGCCACGAAGGGATCACGATCCA 1379 ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 1361 ATGATGTGATCTTGATACTGGATGATCGAGAAAAGTTTGCCACCAAAGGATCACGATCCA 1420 Query 1380 GGAATATAGTTGATAACATATGCTCTGAATTCAATATCAAGATTGAGGTTAGACGATTAC 1439 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1421 GGAATATAGTTGAAAACATATGCTCTGAATTCAACATCAAGATTGAGGTTAGACGATTAC 1480 Query 1440 CAGTTGGGGATTGTATCTGGATTGCTCGGCATAAGTACTTTGAGACTGAATATGTTCTGG 1499 |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1481 CAGTCGGGGATTGTATATGGATTGCTCGGCATAAGTACCTTGAGACTGAATATGTTCTAG 1540 Query 1500 ACTTTATTGCTGAGAGGAAGAACGTGGATGATATGCGCTCATCAATTAGAGATAATCGCT 1559 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1541 ACTTTATTGCTGAGAGGAAGAACGTTGATGATATGCGCTCATCAATTAGAGATAATCGCT 1600 Query 1560 ACAGAGACCAAAAACTTAGACTTCAGAGATCGGGATTCAAGAAGCTCATATATATTCTTG 1619 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1601 ACAGAGACCAAAAACTTAGACTTCAGAGATCGGGATTCAAGAAGCTCATATACATTCTTG 1660 Query 1620 AAGGGGATCCAAACCATTCTGATGCAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAG 1679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1661 AAGGGGATCCAAACCATTCTGATGCAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAG 1720 Query 1680 AGATTCTGGAGGGATTTGATGTGCTGAGGACACAAGGGCTGGGTGAGACGCTAAGGAAAT 1739 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1721 AGATTCTGGAGGGATTTGATGTGCTGAGGACACACGGGCTGGGTGAGACGCTAAGAAAAT 1780 Query 1740 ACGGCTACCTCACGAAATCAATATATCAATACTACAAGTTACGGGTGAATGATAATGACC 1799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1781 ACGGCTACCTCACGAAATCAATATATCAATACTACAAGTTACGGGTGAATGATAATGACC 1840 Query 1800 AGAGCAAAGTCGCAGCCTCGTGTCCTTCTTTTGATAGTTTTGTCAAAAGGTGTCAAGACC 1859 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1841 AGAGCAAAGGCGCAGCCTCATGTCCTTCTTTTGATAGTTTTGTCAAAAGGTGTCAAGACC 1900 Query 1860 TTGATAAAATGACAATCAGCGATGTATTTGCCATTCAGCTTATGCAGATCCCGCAGGTAA 1919 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1901 TTGATAAAATGACAATCAGCGATGTATTTGCCATTCAGCTAATGCAGGTCCCGCAGGTAA 1960 Query 1920 CGGAGGAAATTGCCATAGCGGTTCTTGATA-GTTACCCAACGCTTTTGTCTCTTGCTTCT 1978 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1961 CGGAGGAAATTGCCATAGCGGTTCTTGATATGT-ACCCAACGCTTTTGTCTCTTGCTTCT 2019 Query 1979 GCGTATTCTCATCTAGAAGG-GAATGTCTCTGCGCAAGAAGAGATGTTGAGAAATAGAAG 2037 || |||||||||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct 2020 GCCTATTCTCATCTAGAAGCAGA-TGTCTCGGCGCAAGAAGAGATGTTGAGAAATAGAAG 2078 Query 2038 TAACAATGTAATCTGTGCATCAGCTAGTAAGAATATATTCAAGTTAGTTTGGGGTGAATG 2097 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2079 CAACAATGTAATATGTGCATCAGCTAGTAAGAATATATTCAAGTTAGTTTGGGGTGAATG 2138 Query 2098 A 2098 | Sbjct 2139 A 2139 > AT5G39770.1 | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr5:15919241-15927549 REVERSE LENGTH=3819 Length=3819 Score = 547 bits (296), Expect = 1e-154 Identities = 462/540 (86%), Gaps = 20/540 (4%) Strand=Plus/Plus Query 206 CCCAAAGGTTTGTCGGAAAATCTGGAGAGGACATTTGTTAAGGCGTATAGGAATGTCTGC 265 ||||| |||||||| ||| ||| ||||| || ||||||||| || || || ||||||||| Sbjct 2284 CCCAAGGGTTTGTCCGAATATCAGGAGATGAAATTTGTTAAAGCCTACAGAAATGTCTGC 2343 Query 266 GACGCCAAGGATCCCATTAACACACTCAAAGACTTGTCGCAGATCAAGGGCTTTGGCAAG 325 |||||||||||| | ||| | || ||||||||||||||| |||||||||| ||||||||| Sbjct 2344 GACGCCAAGGATTCAATTGATACCCTCAAAGACTTGTCGAAGATCAAGGGATTTGGCAAG 2403 Query 326 TGGATGGTTAAGCTCATGAAAGGATATTTTGATACTGGTGCT-CAAAGTTCTGAGCAAGA 384 | ||||||||||||||| |||||||||||| |||||||||| | |||||| |||||||| Sbjct 2404 TATATGGTTAAGCTCATGCAAGGATATTTTGTTACTGGTGCTGC-AAGTTCCGAGCAAGA 2462 Query 385 AGATTTACCT-GATAGGCGTGCTGGGAAAAAGGCTAATGGa-aaaaaaCGCTACATTCCG 442 || ||||||| || | ||||||||||||||||| || ||| | || || |||| ||| Sbjct 2463 AGCTTTACCTGGA-AATCGTGCTGGGAAAAAGGCCAAGGGATCAGAACCG-TACAAGCCG 2520 Query 443 CAAAGAAATTCTGTGGGC-TATGCATTACTAATAACGTTGCACAGG---AGGACTACAAA 498 ||||||||| ||| ||| ||||| |||| |||| ||||||||| | |||| |||| Sbjct 2521 CAAAGAAATACTG-CGGCTTATGCGTTAC---TAACATTGCACAGGTTTAAGACTGCAAA 2576 Query 499 TGGGAAAGAATTCATGCGTAAACAAGAGCTTATTGATGCTGCTGACGCTAGTGGGCTCTC 558 ||||||| |||| |||||||||||| ||||||| || ||||||||||||||||||||||| Sbjct 2577 TGGGAAAAAATTGATGCGTAAACAAAAGCTTATGGACGCTGCTGACGCTAGTGGGCTCTC 2636 Query 559 ACACT-CTCCTGTTGGGCCAGAGAAAGGAAAAGGGAAAGCAGGACTTGG-ACACTCTAAG 616 ||| | | || ||| |||||||||||||||||| |||||||||||||| || ||||||| Sbjct 2637 ACA-TGTTTCTATTGCGCCAGAGAAAGGAAAAGGAAAAGCAGGACTTGGAAC-CTCTAAG 2694 Query 617 AGGGAGTGGTATAGTGGATGGAGCTGCATGACCACACTTATACAGAAGGGATTGGTGGTG 676 |||||||||||||| ||||||||||||||| | | ||||||| ||||||||||||||||| Sbjct 2695 AGGGAGTGGTATAGCGGATGGAGCTGCATGTCGAAACTTATAGAGAAGGGATTGGTGGTG 2754 Query 677 AAATCTAGCAACCCAGCAAAGTACATGCTGACAGTAGAAGGTCGGGAA-GTTGCAAATGA 735 |||| |||||||||||||||||||||||||||||| ||||| ||| || || ||| |||| Sbjct 2755 AAATTTAGCAACCCAGCAAAGTACATGCTGACAGTTGAAGGCCGG-AATGTAGCAGATGA 2813 Score = 488 bits (264), Expect = 8e-137 Identities = 390/448 (87%), Gaps = 19/448 (4%) Strand=Plus/Plus Query 1467 GGCATAAGTA-CTTTGAGACTGAATATGTTCTGGACTTTATTGCTGAGAGGAAGAACGTG 1525 |||||||||| | ||| |||||||||||| |||||||||| ||||||||||||||| Sbjct 3125 GGCATAAGTACCAACAAGA-TGAATATGTTCTCGACTTTATTGTTGAGAGGAAGAACGTT 3183 Query 1526 GATGATATGCGCTCATCAATTA-GAGATAATCGCTAC-AGAGACCAAAAACTTAGACTTC 1583 |||||||||||||| ||||||| | |||||||||||| || ||||||||||||||||||| Sbjct 3184 GATGATATGCGCTCGTCAATTATG-GATAATCGCTACAAG-GACCAAAAACTTAGACTTC 3241 Query 1584 AGAGATCGGGATTCAAGAAGCTCATATATATTCTTGAAGGGGATCCAAACCATTCTGATG 1643 ||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| | | Sbjct 3242 AGAGATCGGGAATCAAAAAGCTGATATACATTCTTGAAGGGGATCCAAACCAGTCT-AAG 3300 Query 1644 -CAGCAGAAAGCATTAAAACAGCTTGTTTCACGACAGAGAT-TCTGG-AGGGATTTGATG 1700 | ||||||||||||||||| ||||||||||| || ||||| | ||| |||| ||||||| Sbjct 3301 ACTGCAGAAAGCATTAAAACGGCTTGTTTCACTACGGAGATAT-TGGAAGGG-TTTGATG 3358 Query 1701 TGCTGAGGACACAA-GGGCTGGGTGAGACGCTAAGGAAATACGGCTACCTCACGAAATCA 1759 || |||| ||| || || ||||||||||||||||| |||||||| || ||||| ||||| Sbjct 3359 TGGTGAGAACA-AACGGACTGGGTGAGACGCTAAGAAAATACGGTTATCTCACTAAATCG 3417 Query 1760 ATATATCAATACTACAAGTTACGGGTGAATGATAATGACCAGAGCAAAGTCGCAGCCTCG 1819 ||||| ||||||||||||| | |||||||| |||||||||| ||||| || | |||| Sbjct 3418 ATATACCAATACTACAAGTCGCTGGTGAATG---ATGACCAGAGGAAAGTTGCGGACTCG 3474 Query 1820 TGTCCTTCTTTTGATAG-TTTTGTCAAAAGGTGTCAAGACCTTGATAAAATGACAATCAG 1878 |||||||||| ||| | ||||||| ||||||||| |||||||| ||||||||||||||| Sbjct 3475 TGTCCTTCTTACGAT-GATTTTGTCCAAAGGTGTCCAGACCTTGGTAAAATGACAATCAG 3533 Query 1879 CGATGTATTTGCCATTCAGCTTATGCAG 1906 |||||||||||||||||||||||||||| Sbjct 3534 CGATGTATTTGCCATTCAGCTTATGCAG 3561 Score = 202 bits (109), Expect = 1e-50 Identities = 206/249 (83%), Gaps = 22/249 (9%) Strand=Plus/Plus Query 1122 GTCAAGTTGATCTTGAGGGATCTCGTGCTAAGAAGTTCCGCTCTTGCAATGATGGACCCA 1181 |||||||||||||||||||||||||||||||||||||||| |||| ||| | | || | Sbjct 2897 GTCAAGTTGATCTTGAGGGATCTCGTGCTAAGAAGTTCCGTTCTT-CAA-G-T---CC-A 2949 Query 1182 CCTTAAATCCATGTACATCCGGATCGAGTCATGC-TGTGAAAGCCTGCTCATCTTCTTTG 1240 || || | ||| | | || ||||| | ||||||||||||||||||||||| Sbjct 2950 TGTTCT-TCTA-GTA--T----A---AGCCATGCCT-TGAAAGCCTGCTCATCTTCTTTG 2997 Query 1241 GTATCAGATGGAACCAAAGGAATAACAAATGTTCCACGCCTCCCTCCTCTTCA-ATTTGG 1299 | ||| ||||||||| ||||| |||||| | |||||||||| || |||||| | ||| || Sbjct 2998 GCATCTGATGGAACCGAAGGAGTAACAACTATTCCACGCCTTCCACCTCTT-AGATTCGG 3056 Query 1300 AGAAACGTTTGAGGAAGCATATGATGTGATCTTGATATTGGATGATCGAGAAAAGTTTGC 1359 |||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| Sbjct 3057 AGAAGCGTTTGAGGAAGTATATGATGTGATCTTGATACTGGATGATCGAGAACAGTTTGC 3116 Query 1360 CACGAAGGG 1368 ||| ||||| Sbjct 3117 CACTAAGGG 3125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104166130875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5