BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491666
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30850.1 | Symbols: HHP2 | heptahelical transmembrane prote... 1977 0.0
AT4G30845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 255 7e-67
> AT4G30850.1 | Symbols: HHP2 | heptahelical transmembrane protein2
| chr4:15020415-15022445 REVERSE LENGTH=1369
Length=1369
Score = 1977 bits (1070), Expect = 0.0
Identities = 1274/1367 (93%), Gaps = 35/1367 (3%)
Strand=Plus/Plus
Query 1 AGCGTACCACGAAGATCGGaaaaaaaCAAATCAGATTCTGAAATATTG---AT----A-A 52
||| |||||||||||||| |||||||||||||||||||| ||||| || || | |
Sbjct 1 AGCATACCACGAAGATCGAAAAAAAACAAATCAGATTCTCAAATACTGAAAATAAAAAGA 60
Query 53 A-AAGAGAGAAATCGACGGTGGTGGTTGATTCGCCGGAGTTCAATTTCGTCGCTCGATTT 111
| |||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 61 AGAAGAGAGAAATCTACGGTGGTGGGTGATTCGCCGGAGTTCAATTTCGTAGCTAGATTT 120
Query 112 CTCCTCCTTTT-CCCCCGACGAGC--TGC--GAGAGGGAGGGGAATCATGCAGAAACGGA 166
||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 CTCCTCCTTTTCCCCCCGACGAGCTGTGCGAGAGAGGGAGGGGAATCATGCAGAAACGGA 180
Query 167 GAACGGTGAAGGAATCTCCGAAGATAAAGGTGAGAAATGG-GAAGGTTTTGGATTCCGGC 225
||||||||||||||||| ||||||| | |||||||| |||| | |||||||||||
Sbjct 181 GAACGGTGAAGGAATCTACGAAGAT--A----AGAAATGGTAAAGG-TATGGATTCCGGC 233
Query 226 GaaaaaaaGAGATCTGAGAAGAGATTGATGAAGTTTGAAGAGTTACCTAGGTATTTGAAA 285
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 234 GAAAAGAAGAGATCTGAGAAGAGATTGATGAAGTTCGAGGAGTTACCTAGGTATTTGAAA 293
Query 286 GATAACGAGTTCATACACAATCATTATCGATGTGAGTGGTCAATCAAAGAAACTTTCCTC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GATAACGAGTTCATACACAATCATTATCGATGTGAGTGGTCAATCAAAGAAACTTTCCTC 353
Query 346 AGCGCTTTCTCATGGCACAATGAGACTCTCAACATCTGGACGCATTTGTGTGGGTTTGCG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 354 AGCGCTTTCTCATGGCACAATGAGACTCTCAACATCTGGACGCATTTGTGTGGATTTGCG 413
Query 406 ATATTTGCTTGGATGATGGTTGTGAGTTCCCTGGAGACGACGGAGCTTGGCCTCACCGGC 465
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 414 ATATTTACTTGGATGATGGTTGTGAGTTCAATGGAGACGACGGAGCTTGGCCTCGCCGGC 473
Query 466 TTCGTTAGCCTTCTCTCCGGAGCAACAATTCGCTGGCCATGGCCGTCAATGGCGATGTCA 525
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 474 TTTGTTAGCCTTCTCTCCGGAGCAACAATTCGCTGGCCATGGCCGTCAATGGCAATGTCA 533
Query 526 AAAGATGTTTACTTCTCCAGCGATCAAACTCTGCATCACGATTTGAATGTGACACACACT 585
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 534 AAAGATGTTTACTTCTCCAGCGATCAAACTCTGCATCACGACTTAAACGTGACACACACT 593
Query 586 CGCTCACTCCTGAATTCTCAAGGAGATGTTAACTACGAAGCCGTTCCTAAATGGCCATGG 645
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 594 CGCTCGCTCCTGAATTCTCAAGGAGATGTTAACTACGAAGCCATTCCGAAATGGCCATGG 653
Query 646 CTCGTGTTCTT-ATCCGGAGCAATGGGCTGCTTGATCTGCAGTTCCATGTCTCACCTCTT 704
|| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 CTTGTGTTCTTGA-CCGGAGCAATGGGCTGCTTGATCTGCAGTTCCATGTCACACCTCTT 712
Query 705 CGCCTGCCACTCTAGACGATTCAACCTCTTTTTCTGGCGTCTAGACTATGCCGGAATCTC 764
|||||| ||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 713 CGCCTGTCACTCCAGACGGTTCAACCTCTTCTTCTGGCGTCTAGACTACGCTGGAATCTC 772
Query 765 CCTCATGATCGTCTGTTCATTCTTCGCACCTATCTACTACGCATTCTCCTGCCATACTTA 824
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 773 CCTCATGATCGTCTGTTCATTCTTCGCACCTATCTACTATGCATTCTCATGCCACACTTA 832
Query 825 CTGGCGActcttctacctctcctcgatctcaatcctcggtctcctcgccatcttcactct 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 833 CTGGCGACTCTTCTACCTCTCATCGATCTCAATCCTCGGTCTCCTCGCCATCTTCACTCT 892
Query 885 cctctctccATCACTTTCAGCTCCACGTTTCAGATCTTTCAGAGCAGCTCCT-TTCCTAA 943
||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 893 CCTCTCTCCATCACTCTCAGCTCCACGTTTCAGATCTTTCAGAGCAGCTC-TGTTCCTAA 951
Query 944 CAATGGGATTCTCTGGCGTAATACCGGCCTCACATGTGCTTTACCTTCACAAAGATCACC 1003
|||||||||| |||||||||||||| ||| ||||||||||||||||||| || |||||||
Sbjct 952 CAATGGGATTTTCTGGCGTAATACCAGCCACACATGTGCTTTACCTTCATAAGGATCACC 1011
Query 1004 CAAACGTGCTTATCGCTCTCGTATATGAACTTGCGATGGCTGTGTTGTATGCAACAGGAG 1063
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAAACGTGCTTATAGCTCTCGTATATGAACTTGCGATGGCTGTGTTGTATGCAACAGGAG 1071
Query 1064 CAGCGTTTTATGTTACCCGCATACCTGAAAGATGGAAGCCTGGGGCTTTCGATATTGCAG 1123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1072 CAGCGTTTTATGTTACCCGCATACCTGAAAGATGGAAGCCTGGGGCTTTTGATATTGCAG 1131
Query 1124 GACATAGCCATCAGATATTCCATGTGTTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GACATAGCCATCAGATATTCCATGTGTTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTG 1191
Query 1184 CCAGTCTTCTCATCATGGATTTTCGACGGGCTTCTCCTTCTTGTGCCTTTTAACTC-A-- 1240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1192 CCAGTCTTCTTATCATGGATTTTCGACGGGCTTCTCCTTCTTGTGCCTTTTAACTCGAAA 1251
Query 1241 -----TTGTAAAACATTTAGTGATACTTTCAATGTATCAATCAATGTATGTGTGTCCCCA 1295
|||||||||||||||| |||||| || | || |||||||||||| ||||||||
Sbjct 1252 ACACATTGTAAAACATTTAGTAATACTT-CATTCAATGTATCAATGTATGTTTGTCCCCA 1310
Query 1296 TAGAAGACGCAATGTACTATCCAAGTTACTCAAAAGTAAACAAAAAC 1342
||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1311 TAGAAGACGCAATGTACCATCCAAGATATTCAAAAGTAAACAAAAAC 1357
> AT4G30845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:15019877-15020509 FORWARD LENGTH=553
Length=553
Score = 255 bits (138), Expect = 7e-67
Identities = 150/156 (96%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 1361 TATAGAAGGAATCAAGGAACCTCTAATCAGTTGATTCATCGGAAAATGAAAGAGCAAGAA 1420
|||||||||||||||||||||||||||||||||| |||| |||||||||||| || || |
Sbjct 385 TATAGAAGGAATCAAGGAACCTCTAATCAGTTGAATCATTGGAAAATGAAAGGGCGAGGA 326
Query 1421 AGATACAGAGAGGAACAACAAGAAAAGCAGCAATCTTCAACAATTCCTCTGTTTCTTTGG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 AGATACAGAGAGGAACAACAAGAAAAGCAGCAATCTTCAACAATTCCTCTGTTTCTTTGG 266
Query 1481 AGATCACACTTATTCTTGACCAATCACCACTATACC 1516
||||||||| ||||||||||||||||||||||||||
Sbjct 265 AGATCACACCTATTCTTGACCAATCACCACTATACC 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5