BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491672
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30820.1 | Symbols: | cyclin-dependent kinase-activating ki... 859 0.0
> AT4G30820.1 | Symbols: | cyclin-dependent kinase-activating
kinase assembly factor-related / CDK-activating kinase assembly
factor-related | chr4:15006489-15008546 FORWARD LENGTH=900
Length=900
Score = 859 bits (465), Expect = 0.0
Identities = 585/641 (91%), Gaps = 15/641 (2%)
Strand=Plus/Plus
Query 109 GGTAGAGGAGAGGACAAGAAGCCCAGGCAGCAGCAACCATGGTGATGGTGTCTAATTCTA 168
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 158 GGTAGAGGAAAGGACAAGAATCCCAGGCAGAAGCAACCATGGTGATGGTGTCTAATTCTA 217
Query 169 CCCATCACAACAAGGAAATACATGTCAGAAGGAGAATCTCTGAGATATACAATAGACGGG 228
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CCCATCAAAATAAGGAAATACATGTCAGAAGGAGAATCTCTGAGATATACAATAGACGGG 277
Query 229 AAGAGGATTTTCCATCCCTTAAAGACTACAATGACTACTTGGAAGAAGTGGAGTGCATGG 288
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AAGAGGAGTTTCCATCACTTAAAGACTACAATGACTACTTGGAAGAAGTGGAGTGCATGG 337
Query 289 TATTCGACTTGATAGATGGAATCAATGTTGAGGCGATTGAGGAGAAGATTAAGAGATATT 348
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 338 TATTCGACTTGATAGATGGAATCAATGTCGAGGCGATTGAGCAGAAGATTAAGAGATATT 397
Query 349 CTCAGGAGAATGCTGAACAGATCATGATTAATCGAGCTCGCAAGGTAGAAGAATTGACTG 408
|| ||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||
Sbjct 398 CTAAGGAGAATGCTGAACAGATAATGATTAATAGAGCTCGTAAGGCAGAAGAATTGACTG 457
Query 409 CAGCATTGGCAGCTTGCAAGGCCCAACCCCCACAGACAGATGCTGACACGTCGTCGAACC 468
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 CAGCCTTGGCAGCTTGCAAGGCCAAACCCCCACAGACAGATGCTGACACGTCGTCGAACC 517
Query 469 ATGGGGTTACGGCTGGAACTACATACGGTCAGGCTCCACGACCAACGGGAATGGGCCCAC 528
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 518 ATGGGGTCACGGCTGGAACTACATATGGTCAGGCTTCACGACCAACGGGAATGGGCCCAC 577
Query 529 AACCTGTACCTATAGTAGGAGGGGCAGAGCGTCGACAATACTCTATGGAAGAAGAAGCGA 588
||||||||||||||||||| || |||||||||| ||| ||| |||||||||| |||||||
Sbjct 578 AACCTGTACCTATAGTAGGTGGAGCAGAGCGTCAACATTACGCTATGGAAGACGAAGCGA 637
Query 589 AGAAGAAGCTCCTCAAAGCAGAGAGAGCTCCATGGGCTGGAGGATTTTCCTTAGAGATTA 648
|| || | | ||||||||||||||| || ||||||||| |||||||| |
Sbjct 638 CGAGGAGGATG---AAAGCAGAGAGAGCT----GG-----AGGATTTTCTTTAGAGATAA 685
Query 649 GCAAGAGGAGGGCTTTGGAAGAAGCATTTGCAAGCATTTGGGTTTGATTCCTCTTGAGAG 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 686 GCAAGAGGAGGGCTTTGGAAGAAGCATTTGCAAGCATTTGGGTTTGATTTCTCA--AGCG 743
Query 709 ATATTAGTTTTATCCTTTTAAAACAGTGACGAGGAGGTCTT 749
||||||||||| ||| || | | |||||| ||||||||||
Sbjct 744 ATATTAGTTTTGTCCCTT-ATGATAGTGACTAGGAGGTCTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5