BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491673
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30810.1 | Symbols: scpl29 | serine carboxypeptidase-like 29... 2527 0.0
> AT4G30810.1 | Symbols: scpl29 | serine carboxypeptidase-like
29 | chr4:15003451-15006212 FORWARD LENGTH=1658
Length=1658
Score = 2527 bits (1368), Expect = 0.0
Identities = 1478/1533 (96%), Gaps = 0/1533 (0%)
Strand=Plus/Plus
Query 1 CAATGGCAAAAACCAGAGGGTCTTGTTGTCTCGTCAACGCTCTCATCGCTATTGCTTTTT 60
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 22 CAATGGCCAAAACCAGAGGGTCTTGTTGTCTCGTCAACGCTCTAATCGCTATAGCTTTTT 81
Query 61 TGGCGACAGCCCATTTGTGTGAAGCTGGCTTGTCTCAGAAAGAACAGGACAAGGTCTCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TGGCGACAGCCCATTTGTGTGAAGCTGGCTTGTCTCAGAAAGAACAGGACAAGGTCTCGA 141
Query 121 AATTGCCTGGTCAGGATTTCAATGTTAGCTTTGCTCACTACTCTGGGTTTGTTACTACTA 180
|||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct 142 AATTGCCTGGTCAGAATTTTAATGTTAGTTTTGCTCACTACTCTGGGTTTGTTGCTACTA 201
Query 181 ATGAGGAATTGGGAAGAGCTCTCTTTTACTGGCTCTTTGAAGCCGTCGAAGATGCTAAGT 240
||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 202 ATGAGCAATTGGGAAGAGCTCTCTTTTACTGGTTATTTGAAGCCGTTGAAGATGCTAAGT 261
Query 241 CTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATTTGGTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 262 CTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATATGGTG 321
Query 301 AAGCAGAAGAGATAGGGCCATTTCACATTAAGGCAGATGGGAAGACTCTTTACCTTAATC 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AAGCAGAAGAGATAGGACCATTTCACATTAAGGCAGATGGGAAGACTCTTTACCTTAATC 381
Query 361 AATATTCTTGGAACCAAGCTGCAAATATTTTGTTCCTTGATGCACCTGTTGGAGTTGGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AATATTCTTGGAACCAAGCTGCAAATATTTTGTTCCTTGATGCACCTGTTGGAGTTGGTT 441
Query 421 ATTCTTACTCAAACACCTCTTCTGATTTGAAGACCAATGGTGATAAAAGAACTGCCGAAG 480
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 442 ATTCATACTCAAACACCTCGTCTGATTTGAAGAGCAATGGTGATAAAAGAACTGCCGAAG 501
Query 481 ACTCACTGAAATTTCTACTGAAATGGGTTGAGCGGTTTCCGGAATACAAAGGAAGGGACT 540
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATTCACTGAAATTTCTGCTGAAATGGGTTGAGCGGTTTCCGGAATACAAAGGAAGGGACT 561
Query 541 TTTATATAGTAGGGGAGAGCTATGCAGGACATTACATTCCTCAGTTGAGTGAAGCCATTG 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 562 TTTATATAGTAGGGGAGAGCTATGCAGGACATTACATTCCTCAGCTGAGTGAAGCCATTG 621
Query 601 TAAGACATAACCAAGGTTCTGACAAAAACAGTATTAATCTGAAGGGTTACATGGTAGGAA 660
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 622 TAAAACATAACCAAGGTTCTGACAAAAACAGTATAAATCTGAAGGGTTACATGGTAGGAA 681
Query 661 ATGGGCTGATGGACGATTTCCATGACAGGCTTGGTCTTTTCCAATATATTTGGTCGTTGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ATGGGCTGATGGACGATTTCCATGACAGGCTTGGTCTTTTCCAATATATTTGGTCGTTGG 741
Query 721 GTTTTATCTCTGACCAAACATACAGCTTACTGCAACTCCAATGTGGTTTTGAATCGTTTA 780
||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 742 GTTTTATATCTGACCAAACATACAGCTTACTGCAACTTCAATGCGGTTTCGAATCGTTTA 801
Query 781 TTCACTCCTCCAAACCGTGTAATAAGATTTTGGAGATAGCGGACAAAGAAATCGGTAACA 840
||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 802 TTCACTCCTCCAAACAGTGTAACAAGATTCTGGAGATAGCGGACAAAGAAATAGGTAACA 861
Query 841 TAGATCAATACAGTGTCTTCACCCCAGCCTGCGTTGCAAATGCTTCCCAGTCAAATATGT 900
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 862 TAGACCAATACAGTGTCTTCACCCCAGCTTGTGTTGCCAATGCTTCCCAGTCAAATATGT 921
Query 901 TGCTAAAGAAAAGACCAATGACTAGCCGCGTGAGCGAACAGTATGATCCTTGTACGGAGA 960
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TGCTAAAGAAAAGACCTATGACTAGCCGCGTGAGCGAACAGTATGATCCTTGTACGGAGA 981
Query 961 AACACACTACAGTTTATTTCAATCTTCCAGAGGTTCAAAAAGCCCTCCACGTCCCAGCAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 982 AACACACTACAGTTTATTTCAATCTTCCAGAGGTTCAAAAAGCCCTCCATGTCCCACCAG 1041
Query 1021 GACTTGCACCATCCAAATGGGATACTTGCAGTGATGTCGTGAATGAACACTGGAATGACT 1080
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1042 GACTTGCACCATCAAAATGGGATACTTGCAGTGATGTCGTGAGTGAACACTGGAATGACT 1101
Query 1081 CTCCTTCTTCGGTTCTAAACATTTACCACGAGCTTATAGCTGCTGGGCTTCGTATCTGGG 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CTCCTTCCTCGGTTCTAAACATTTACCACGAGCTTATAGCTGCTGGGCTTCGTATCTGGG 1161
Query 1141 TTTTCAGTGGGGACGCAGATGCTGTTGTACCAGTCACATCAACCCGGTACAGTATCGATG 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTTTCAGTGGGGACGCAGATGCCGTTGTACCAGTCACATCAACCCGGTACAGTATCGATG 1221
Query 1201 CACTAAACCTACGTCCTTTGAGTGCCTATGGTCCTTGGTACTTAGATGGACAGGTGGGAG 1260
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 CACTAAACCTTCGTCCTTTGAGTGCCTATGGTCCTTGGTACTTAGATGGACAGGTGGGAG 1281
Query 1261 GCTGGAGTCAGCAGTATGCTGGTCTGAACTTTGTGACAGTGAGAGGTGCAGGCCATGAAG 1320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GGTGGAGTCAGCAGTATGCTGGTCTGAACTTTGTGACAGTGAGAGGTGCAGGCCATGAAG 1341
Query 1321 TTCCTTTGCACAGACCGAAGCAAGCTCTTGCGCTCTTCAAGGCTTTTATATCTGGAACTC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TTCCTTTGCACAGACCGAAGCAAGCTCTTGCGCTCTTCAAGGCTTTTATATCTGGAACTC 1401
Query 1381 CGTTGTCCACACCTGAGAACAACATCAGCCGCGACATGTCTGAACTCATTACTGACTCAT 1440
| |||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1402 CATTGTCCACACATGAGAACAGCATCAGCCGCGACATGTCTGAACTCGTTAGTGACTCAT 1461
Query 1441 AATGAGTTCTGATTTGATGTAATGTGTAATTTGGATTCTCAATCAAAAACTTTCCACAGA 1500
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1462 AATGAGTTCTGATTTGATGTAATGTGTGATTTGGATTCTCAATCAAAAACTTTCCACATA 1521
Query 1501 GGGCACTGTAAGAAGAAGAGAGAAAGAGAATAA 1533
|| | || || |||||||| ||||||||||||
Sbjct 1522 GGCCGTTGAAATAAGAAGAGGGAAAGAGAATAA 1554
Score = 106 bits (57), Expect = 8e-22
Identities = 70/76 (92%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 1534 CTTCTTCTTCTTCTGGTTGTTTGTTTGTTTGG-TGAAACATTTGATGTTTGGAATCTAAT 1592
|||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct 1583 CTTCTTCTTCTTCTGGTTGTTTGTTTGTTTGGAT-AAACATTTGCTGCTTGGAATCTAAT 1641
Query 1593 AAAATAAGTTTGTACC 1608
|||| |||||| ||||
Sbjct 1642 AAAAGAAGTTTCTACC 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5