BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491674
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 924 0.0
> AT4G30800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr4:15001134-15002671 FORWARD LENGTH=841
Length=841
Score = 924 bits (500), Expect = 0.0
Identities = 566/597 (95%), Gaps = 7/597 (1%)
Strand=Plus/Plus
Query 27 CGTCAGGAGATTTCAAGGTTTAGGGTTTCTGCAATTCAACCATGGCGGAGCAGACGGAGA 86
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 42 CGTCAGAAGATTTCAAGGTTTAGGGTTTCTGCAATTCAACCATGGCAGAGCAGACGGAGA 101
Query 87 AGGCGTTTCTTAAGCAACCAAAAGTTTTCTTAAGCTCGAAGAAATCTGGTAAGGAAAAGA 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 102 AGGCGTTTCTTAAGCAACCAAAAGTTTTCTTAAGCTCGAAGAAATCTGGTAAGGGAAAGA 161
Query 147 GGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAACATTGGCCTTGGTTTCAAAACTCCTA 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 162 GGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAACATTGGCCTTGGTTTCAAAACTCCAA 221
Query 207 GAGAGGCTATTGAAGGAGCATACATTGACAAGAAATGTCCCTTTACTGGTACGGTTTCAA 266
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 222 GAGAGGCTATTGAAGGAACATACATTGACCAGAAATGTCCCTTTACTGGTACGGTTTCAA 281
Query 267 TCAGAGGCCGCATCTTGTCAGGCACTTGTCACAGTGCAAAGATGCAGAGGACGATCATTG 326
|||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 282 TCAGGGGTCGCATCTTGTCTGGAACTTGTCACAGTGCAAAGATGCAGAGGACGATCATTG 341
Query 327 TTCGTAGGGACTATCTTCACTTTGTGAAGAAGTATCAAAGATATGAGAAAAGACACTCAA 386
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 342 TTCGTAGGGACTATCTTCATTTTGTGAAGAAGTATCGAAGATATGAGAAAAGACACTCAA 401
Query 387 ACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCATGTTACCATTG 446
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 402 ACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTG 461
Query 447 GGCAATGCAGGCCACTGTCAAAGACGGTGAGGTTCAATGTCTTGAAGGTCATTCCGGCTG 506
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 462 GGCAATGCAGGCCATTGTCAAAGACGGTGAGGTTCAATGTCCTGAAGGTCATTCCGGCTG 521
Query 507 GAAGCTCTTCCATTGGGAAGAAAGCATTCACTGGAATGTAAATGAGATTCAGATCTGTTG 566
|||||||||| || ||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 522 GAAGCTCTTCTATCGGGAAAAAAGCATTCACTGGAATGTAAAAGAGATTCAGATTTGTTG 581
Query 567 GAAAAAGGTGCTAGCTA-T-T-CTAAGGGCTTAGAATTTTTCTA-CTAGAGTTATTG 619
|||| ||||| | ||| | | ||||| | |||||||||||||| | ||||||||||
Sbjct 582 -AAAA-GGTGCGAACTAGTATTCTAAGAGTTTAGAATTTTTCTAGC-AGAGTTATTG 635
Score = 93.5 bits (50), Expect = 3e-18
Identities = 59/63 (94%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 618 TGATCAAAGGAAACCGGATTTTCTCTGTTTCATTTAGTGATTCAAGTATCAAGATAAGTC 677
||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 656 TGATCAAAGGAAACCAGA-TTT-TCTGTTTCATTTAGTGATTCAAGTATCAAGATATGTC 713
Query 678 TAT 680
|||
Sbjct 714 TAT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5