BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491676
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3334 0.0
AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 484 1e-135
> AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24100.1);
Has 109 Blast hits to 109 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr4:14990341-14993069
FORWARD LENGTH=2166
Length=2166
Score = 3334 bits (1805), Expect = 0.0
Identities = 1943/2008 (97%), Gaps = 16/2008 (1%)
Strand=Plus/Plus
Query 114 GGttttttttttCTGGGGATGGTGGAAATGAGGAAATCTGGAGGTTTAAGACGAACGGAG 173
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 165 GGTTTGTTTTTTCGGGGGATGGTGGAAATGAGGAAATCTGGAGGTTTAAGAC---CGGAG 221
Query 174 TCTGAATTGGCGGCCAAGTGCCGAGATGAGCTACCGGTGAAATTGGAGATTGCTGAGGAT 233
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 222 TCTGAATCGGCGGCCAGGTGCCGAGATGAGCTACCGGTGAAATTGGAGATTGCTGAAGAT 281
Query 234 GATTTAGAAGAAGAGCATGCTCCTCTCACCAAACGATCTAGGTTATGGAGTCCTGAGACA 293
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 282 GATTTAGAAGAAGAGCATGGTCCTCTCAACAAACGATCTAGGTTATGGAGTCCTGGGACA 341
Query 294 AGTTCATCGACAATGGCACCAGCTAAGTATAACCCGCTTGATGAGCCGAGTCCTCTTGGG 353
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AGCTCATCGACAATGGCACCAGCTAAGTATAACCCGCTTGATGAGCCGAGTCCTCTTGGA 401
Query 354 TTGAATCTTAGGAAGAGTCCATCCTTGTTGGAGTTGATTCAGATGACGATAACGCATTGT 413
|||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 402 TTGAGTCTTAAGAAGAGTCCATCTTTGTTGGAGTTGATTCAGATGAAGATAACGCATTGT 461
Query 414 GGTGACCCTAAAGCAGCTGAAACGCTGAAAGCTGGTGCACTTGGCTCTGGTCTTAAGAAA 473
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 462 GGTGATCCTAAAGCAGCTGAAACGTTGAAAGCTGGTGCACTTGGCTCTGGTCTTAAGAGA 521
Query 474 GAAAGTAAAAGTATTGCTGCTGCTGCATCACTTGGACCGACTTTGGCGCCAGGAAGTATT 533
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 522 GAAAGTAAAACTATTGCTGCTGCTGCATCAGTTGGACCGACTTTGGCGCCAGGAAGTATT 581
Query 534 GAGAAGCTGAAAGCTTCCAACTTTCCTGCTTCGCTTTTGAAGATCGGACAGTGGGAGTAT 593
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 582 GAGAAGCTGAAAGCTTCTAACTTTCCTGCTTCGCTTTTGAAGATCGGGCAGTGGGAGTAT 641
Query 594 AAATCGAGGTATGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCAAAACACAAACTTGTT 653
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 642 AAATCGAGGTATGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCTAAACACAAACTTGTT 701
Query 654 TGGGAAGTATTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAATGGTCAGATATTATG 713
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 702 TGGGAAGTGTTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAGTGGTCAGATATTATG 761
Query 714 GCTTTGAAGGCAAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGCTAGA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GCTTTGAAGGCAAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGCTAGA 821
Query 774 CAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAACATACTTTGTGGCAGGCG 833
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 822 CAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAGCATACCTTGTGGCAGGCG 881
Query 834 ACATCAGATTTTACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATGTGCT 893
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 ACATCAGATTTCACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATGTGCT 941
Query 894 CAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCTGTTCCAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCTGTTCCAT 1001
Query 954 CTAAGCCGACAGCCGGAGATAGCTATTGACTCTCCCTACTTTGATGCGCGGCAATCTATT 1013
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1002 CTAAGCCGACAGCCGGAGATAGCTATTGACTCTCCCTACTTTGATGCACGGCAATCTATT 1061
Query 1014 TTTGAGGATCCAAGTGAATCAAAAGGCCATCCTTTTGGGAATTTGAATCTTAGCACAGGT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1062 TTTGAGGATCCAAGTGAATCAAAAGGCCATCCTTTTGGGAATTTGAATCTTAGTACAGGT 1121
Query 1074 CCTTCGAAT-TCTGGGACTCAGAATTTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGA 1132
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CCTTCG-ATCTCTGGGACTCAGAATTTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGA 1180
Query 1133 GCATATGTATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GCATATGTATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAA 1240
Query 1193 TGAAGGAATTGGAGGTTCTGAAGCAGTCAATTCAAGAAACAGAACAGATTGTGGTCAGAT 1252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TGAAGGAATTGGGGGTTCTGAAGCAGTCAATTCAAGAAACAGAACAGATTGTGGTCAGAT 1300
Query 1253 CGAAGCACCTGGACTACACCAATCTATGTCACTGAGTGATTTCCTTGCAGTTCTCTGTGA 1312
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1301 CGAAGCACCTGGAATACACCAATCTATGTCACTGAGTGATTTCCTTGCGGTTCTCTGTGA 1360
Query 1313 TTCAAAAAACACAACGGATTTGAATCTGGCTGAAGACGTAGCTGGACTACACCAATCTAT 1372
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1361 TACAAAAAACACAACGGATTTGAATCTGGCTGACGACGTAGATGGACTACACCAATCTAT 1420
Query 1373 GTCAGTTAGTGATTTCGTTGCATATTTATCTGATTCAAGAAACATAACTGATTCAGATCA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GTCAGTTAGTGATTTCGTTGCATATTTATCTGATTCAAGAAACATAACTGATTCAGATCA 1480
Query 1433 GATAAAAGTACCTGGACTACACCAATCTATGTCGGTGAGCGATTTCGTTGGACTTCTCTC 1492
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1481 GATAAAAGTACCTGGACTACACCAATCTATGTCAGTGAGCGATTTCGTTGGACTTCTCTC 1540
Query 1493 TGATTCTGCTGGTGGAAGTCATCCGGAACATATGGAGAAATTTGAGATCATGAAACAGCA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TGATTCTGCTGGTGGAAGTCATCCGGAACATATGGAGAAATTTGAGATCATGAAACAGCA 1600
Query 1553 GTTGCTAAGTGATAATATCCAGTTCGACGCACCAGATGAGAAGTCTCTCATGCCAAGGGT 1612
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1601 GTTGCTAAGTGATAATATCCAGTTCGAGGCACCAGATGAGAAGTCTCTCATGCCAAGGGT 1660
Query 1613 TAACTCTTTATTCAACCTCTTGTACAAGGATCCCAATGTCGCTGCAAACTCACAGCTCAA 1672
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1661 TAACTCTTTATTCAACCTCTTGTACAAGGATCCCAACGTCGCTGCAAACTCACAGCTCAA 1720
Query 1673 TACCGAAATGTCGGTTGGATTGAAGTCTGAACCCAAGGGAATTGTTTCTGacaacaacaa 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 TACCGAAATGTCGGTTGGATTGAAGTCTGAACCCAAGGGAATTGTTTCTGACAACAACAA 1780
Query 1733 caacaacGACA---------GAGTTCTTGATCCAGCTTCTAGCAGCAAACCACAAGGTAT 1783
||||||| ||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1781 CAACAACAACAACAACAACAGAGTTCTTGATACAGCTTCTAGCAGCAAACCACAGGGTAT 1840
Query 1784 GTTAAGGAAAGACTCATTCAGCGATTTGCTATTACACCTCCCCCGGATCACATCCTTGCC 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GTTAAGGAAAGACTCATTCAGCGATTTGCTATTACACCTCCCCCGGATCACATCCTTGCC 1900
Query 1844 AAAGTTCTTGTCCAACATTTCAGAAGAAGATGGTGATGCATATAATAGATAATTTATAGA 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 AAAGTTCTTGTCCAACATTTCAGAAGAAGATGGTGATGCATATAATAGATAATTTATAGA 1960
Query 1904 TAACCGCCTTTCTTTTCTGGATGTGGCAAGTATAGGAACCTGGACTAGTAGCTTTTCTGt 1963
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1961 TA-CCGCCTTTCTTTTCTGGATTTGGCAAGTATAGGAACCTGGACTAGTAGCTTTTCTGT 2019
Query 1964 ttttttttttATTGTAAATCAAAATTATCTCTTGGTAACTACAACCCCCACAGGGATTTT 2023
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2020 TTTTTTTTTC-TTGTAAATCAAAATTATCACTTGGTAACTACAACCCCCACAGGGATTTG 2078
Query 2024 AAGAAACATGTTTTGATGATTAATTTCTGTATATTATTCCCAATATAAACCAAAGTTTGC 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2079 AAGAAACATGTTTTGATGATTAATTTCTGTATATTATTCCCAATATAAACCAAAGTTGGC 2138
Query 2084 AGAGGCGTAAGATTCTATTATTTATCCT 2111
|||||| ||||||| ||||||||||||
Sbjct 2139 AGAGGCAAAAGATTCCATTATTTATCCT 2166
Score = 135 bits (73), Expect = 1e-30
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1 AGAGAGAGATCCCGTAAATGTTTTATACTCTGATTTCTAGGGTTTGCTTTTGATTCTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AGAGAGAGATCCCGTAAATGTTTTATACTCTGATTTCTAGGGTTTGCTTTTGATTCTCTT 66
Query 61 TCGTGTTCCAGATAAA 76
||| ||||||||||||
Sbjct 67 TCGCGTTCCAGATAAA 82
> AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G30780.1);
Has 101 Blast hits to 101 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244886-10246919
FORWARD LENGTH=1640
Length=1640
Score = 484 bits (262), Expect = 1e-135
Identities = 420/497 (85%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 532 TTGAGAAGCTGAAAGCTTCCAACTTTCCTGCTTCGCTTTTGAAGATCGGACAGTGGGAGT 591
|||||||||| |||||||| |||||||||||| | || | | ||| || || |||||||
Sbjct 352 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATTCTCAGGATTGGTCAATGGGAGT 411
Query 592 ATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCAAAACACAAACTT 650
|||| || ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 412 ATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTACTTTGCAAAACATAAACTT 470
Query 651 GTTTGGGAAGTATTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAATGGTCAGATATT 710
|| |||||||| |||||||||||||||||||| || || ||||| || ||||| ||||||
Sbjct 471 GTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATATT 530
Query 711 ATGGCTTTGAAGGC-AAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGC 769
|||||||||||||| || || || || || | ||||||||| ||||| | ||||| ||
Sbjct 531 ATGGCTTTGAAGGCTAATTTG-CCAGAGGATGAACCTGGAACCCTGACTATTGTGCTGGC 589
Query 770 TAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAACATACTTTGTGGCA 829
||| | ||| || |||||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 590 TAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGGCA 649
Query 830 GGCGACATCAGATTTTACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATG 889
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 650 GGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAACAGGCAACATTTTCTGCAGTG 709
Query 890 TGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT-GT 948
| | | |||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 710 TCCCCCAGGGATTATGAACAAACATTTTGAGAAGCTTGTTCAATGTGATCATCG-CTTGT 768
Query 949 TCCATCTAAGCCGACAGCCGGAGATAG-CTATTGACTCTCCCTACTTTGATGCGCGGCAA 1007
|| ||||||||| ||||| |||||| || | | | | || | ||||||| | || | |
Sbjct 769 TCTGTCTAAGCCGGCAGCCAGAGATAAACT-TGGCCGCACCGTTCTTTGATTCACGACTA 827
Query 1008 TCTATTTTTGAGGATCC 1024
||||| |||||||||||
Sbjct 828 TCTATATTTGAGGATCC 844
Score = 145 bits (78), Expect = 2e-33
Identities = 178/223 (80%), Gaps = 20/223 (9%)
Strand=Plus/Plus
Query 1083 TCTGGGA-CTCAGAAT-TTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGAGCATATGT 1140
||| ||| |||| ||| || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 852 TCT-GGATCTCATAATATT-GCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGT 909
Query 1141 ATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAAT-GAAGGA 1199
||| |||||||| |||| ||| || ||||||||||| ||||||||||||| | ||||||
Sbjct 910 CTCTATCTCATGACGCACTATCGCCTAGCTCAGTGATGGATGCTCGTGCAA-TCGAAGGA 968
Query 1200 ATTGGAGGTTCTGAAGCAGTCAATTCAAG-AA-ACAGAACAGATTGTG-GTCAGATCGAA 1256
|||| ||||| || | | ||| || || ||| ||| | ||| | ||||||| ||
Sbjct 969 GTTGGTGGTTC-----CATTGA-TTCGAGGAATACA-AACGG-TTG-GAGTCAGATAAAA 1019
Query 1257 GCACCTGGACTACACCAATCTATGTC-ACTGAGTGATTTCCTT 1298
|||||||||||||||||||| || | ||| |||||||||
Sbjct 1020 ATGCCTGGACTACACCAATCTATCTCGA-TGAACGATTTCCTT 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5