BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491679
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30720.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 3611 0.0
> AT4G30720.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr4:14971906-14975519 REVERSE LENGTH=2488
Length=2488
Score = 3611 bits (1955), Expect = 0.0
Identities = 2104/2176 (97%), Gaps = 9/2176 (0%)
Strand=Plus/Plus
Query 1 CACAGAGACAAGCTTTTTAGTTTGAG----CTCTCACTATGTCTCTCTCGCAAACGAATT 56
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 21 CACAGAGACGAGCTTTTTAGTTTGAGCTCTCTCTCACTATGTCTCTCTCGCAAACGAATT 80
Query 57 TCCTCAGTTCTTCATTTCTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGAGG 116
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 81 TCCTCAGTTCTTCATTACTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGCGG 140
Query 117 TACTCTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCCAAGCGAACCGGGA 176
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 141 TACTTTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCGAAGCGAACCGGGA 200
Query 177 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCCA 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 201 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCTA 260
Query 237 AGGTTAAGAACAAGCTCGAAGGAGTATGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 296
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 261 AGGTTAAGAACAAGCTTGAAGGAGTTTGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 320
Query 297 ATGACCCTGGAAAGGATTTTCTCGGAATTTCCGAAGGTTTGCTTCAAGCCATCGCTAAAG 356
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 321 ATGACCCTGGAAAGGACTTTCTCGGGATTTCAGAAGGTTTGCTTCAAGCCATCGCTAAAG 380
Query 357 TTATTGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 416
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTATCGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 440
Query 417 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTGTATACTGTGGATTTGGATG 476
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 441 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTTTACACTGTGGATTTGGATG 500
Query 477 TGAAGACGCTTCTTGAGTTGGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTG 536
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGAAGACGCTCCTTGAGTTAGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTA 560
Query 537 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 620
Query 597 TGGTGAACGACTGTAAAAGGATCAACAGTGAGACATCATCCGGAGAACATGAACCTCAGA 656
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 621 TGGTGAATGACTGTAAAAGGATCAACAGTGAGACAGCATCCGGAGAATATGAACCTCAGA 680
Query 657 TTATCAATGGCTCTGGAGATCCACACCAGC---GTGGAGGACGAAGCAAACCGAAAATCG 713
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
Sbjct 681 TTATCAATGGCTCTGGAGATCCACACCATCATGGAGGAGGACGAAGCAAACCGAAAATTG 740
Query 714 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCAGCTCTTGTTCTTGCAGAGTTCGGTG 773
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 741 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCTGCTCTTGTACTTGCAGAGTTCGGTG 800
Query 774 CAGATGTGACATTGATAGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATCGGCG 833
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 801 CAGATGTGACATTGATTGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATAGGCG 860
Query 834 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 920
Query 894 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTC 980
Query 954 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGTGCTCCTGATAATATATTGGTCAACGGAA 1013
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 981 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGGGCTCCTGATAATATATTGGTCAACGGAA 1040
Query 1014 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1100
Query 1074 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1160
Query 1134 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAGACCAATTGCAGAGTACTTCCCAGA 1193
||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||
Sbjct 1161 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAAACCAATTGCAGACTACCTCCCAGA 1220
Query 1194 ATTTAAAGTTTGATGCAGTTGTTCTTGCGGTTGGTCACTCAGCACGTGACACATATGAGA 1253
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1221 ATTTAAAGGTTGATGCAGTTGTTCTTGCAGTTGGTCATTCAGCACGTGACACATATGAGA 1280
Query 1254 TGCTTTATTCTCGTAATGTTGAATTGACCCCAAAAGATTTTGCTGTTGGTTTGCGCATTG 1313
||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1281 TGCTTCATTCTCGTAATGTCGAATTGATTCCAAAAGATTTTGCTGTTGGTTTGCGTATTG 1340
Query 1314 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGC-AAGTGAAGTTCTT 1372
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1341 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGCTAA-TGAAGTTCTT 1399
Query 1373 AAAGGACGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1432
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 AAAGGGCGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1459
Query 1433 GCCGAGGATCTCTCGCAGTCTTCATCAAAACGTAGTTGCTACTCCTTCTGCATGTGTCCT 1492
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1460 ACCGAGGATCTCTCGCAGTCTTCATCGAAACGCAGTTGCTACTCCTTCTGCATGTGTCCT 1519
Query 1493 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1579
Query 1553 TTTTCTCGCCGTTCTTCCAAATGGGCCAATGCTGCACTCGTCGTCACAGTATCAGCAAAA 1612
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1580 TTTTCTCGCCGTTCATCCAAATGGGCCAATGCTGCACTCGTCGTTACAGTCTCAGCAAAA 1639
Query 1613 GACTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAGTTT 1672
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1640 GATTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAATTT 1699
Query 1673 GAAAGAAGAGCGGCTATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1732
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 GAAAGAAGAGCAGCCATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1759
Query 1733 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1819
Query 1793 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTACTCATATTACAGAGTCTCTGCGACAG 1852
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||
Sbjct 1820 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTGCTCATATCACAGAGGCTCTGCGAGAG 1879
Query 1853 TCTATCTCTATGTTTGAAAAAGAGTTGCCAGGATTCATCTCAGAGGAAGCACTCCTCCAT 1912
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1880 TCTATCTCTATGTTTGAAAAGGAGTTACCGGGATTCATCTCAGAGGAAGCACTCCTCCAC 1939
Query 1913 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1999
Query 1973 AGCACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGCATT 2032
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2000 AGTACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGAATT 2059
Query 2033 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2119
Query 2093 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTGAAGTAC 2152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2120 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTAAAGTAC 2179
Query 2153 TGATGATGATGATGAT 2168
|||||||| |||||||
Sbjct 2180 TGATGATGCTGATGAT 2195
Score = 198 bits (107), Expect = 2e-49
Identities = 162/186 (87%), Gaps = 13/186 (7%)
Strand=Plus/Plus
Query 2168 TTGTTGAGGTAAAAGAACATCAATGGGGACTGCTTCCTCCAGAATTCAGTTTTGTTGTAC 2227
|||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct 2250 TTGTCGAGGTAAAAGAACATCAAGGGGGACTG----CTCCAAAATCCAGTTTTGTTGTAC 2305
Query 2228 CAAAGCTTAAGAACCTATACAGAAAAAGGCTC-AATCAGAAGC--G--GGAA-C--CATC 2279
|| |||| ||| || ||||||| ||||||| | |||||||||| | |||| | ||||
Sbjct 2306 CATAGCTCAAGGACTTATACAG-AAAAGGCCCAAATCAGAAGCGGGAAGGAATCGTCATC 2364
Query 2280 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTAGTTAAGA 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2365 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTACTGAAGA 2424
Query 2340 AAGTAA 2345
||||||
Sbjct 2425 AAGTAA 2430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116415063855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5