BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491684
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30690.1 | Symbols: | Translation initiation factor 3 prote... 1511 0.0
> AT4G30690.1 | Symbols: | Translation initiation factor 3 protein
| chr4:14960686-14962466 FORWARD LENGTH=1040
Length=1040
Score = 1511 bits (818), Expect = 0.0
Identities = 953/1014 (94%), Gaps = 25/1014 (2%)
Strand=Plus/Plus
Query 33 GAAGCAAATGGCTGGTATCACCATCACCGTCGGATTCAACGCCATTCTCGCCGGAGCCAC 92
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 50 GAAGCAAATGGCTGGGATCACCAGCACCGTTGGATTCAACGCCATTCTCGCCGGAGCCAC 109
Query 93 CAAAACGGTGTCGCATCCTTCACCCTCTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 152
||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 110 CAAAACGGTGTCGCA----T----C-CTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTG 160
Query 153 TCTGGCCGAATTGTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGCCCCGCCAT 212
| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 161 TGTACCCGAATTCTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGTCCCGCCAT 220
Query 213 CACCTGCCGCTACGGAGGCGGTGGTGGCGGAGGAGGCGGAGGGTCTAGATTTCCCGGCGA 272
||| ||||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 221 CACTTGCCGTTACGGAGGCGGTGGTGGC---GGAGGC------TCTAGATTTCCCGGCGA 271
Query 273 TAGGAGAGGTAGGCAAAAAGAATCCGAGGATGATGATGATTCGCTTGATATCTCAGCTAT 332
||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 272 TAGGAGAGGTAGGCAGAAAGAATCCGA-G--GATGATGATTCGCTTGATATCTCAGCTAT 328
Query 333 TAGGTCACCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 392
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TAGGTCAGCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAA 388
Query 393 AGACGAAGCGGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 452
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 AGAAGAAGCTGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGA 448
Query 453 TGCAGATCCTCCGGTTGTCAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 512
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TGCAGATCCTCCGGTTGTTAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAA 508
Query 513 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGCATGGACTTGAAGGAGCTTAAAATGGG 572
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 509 GAGGAAAAAGGAACAGCAGAAGAAAACTACTCGAATGGACTTGAAGGAGCTTAAAATGGG 568
Query 573 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAATTCTTGCA 632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 569 TTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAGTTCTTGCA 628
Query 633 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAA 688
Query 693 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTGCG-ACTGAGG 751
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 689 TATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTG-GTACTGAGG 747
Query 752 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTACCTTGGTGCCAAACAAAGAAGTTA 811
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 748 AGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTGTCTTGGTGCCAAACAAGGAAGTTA 807
Query 812 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATGAAGTTT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 808 TTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATAAAGTTT 867
Query 872 CAGCGGCAGGTATAACTGCAACGCAAGATACATGATGTGGAATTGTCTGATATCAAATGT 931
|||| ||| |||||||||||| ||||||| |||||| ||||||||||||| | ||||||
Sbjct 868 CAGCAGCAAATATAACTGCAACACAAGATATATGATGCGGAATTGTCTGATGTAAAATGT 927
Query 932 TCAGGGAGTTTGATAAATTTCTGTATAGTTCCTTTTCTAATATGCTTCCTGCATTTCCTT 991
|| | || |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
Sbjct 928 TCTGTGACTTTGATAAATTTCTGTATAGTTTCTTTTTTAATATGCTTCTTGCATTTCCAT 987
Query 992 GTA-TCTGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1044
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GTAAT-TGTAACCATAGAAATAGATTATTTGAATGAAGATCTTCGTCAACTTTT 1040
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32
||||||||||||||||||||||||||||||||
Sbjct 1 TTAAATCGGATCATTCTAATTGGTGGAGAGAC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5