BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491691
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30600.1 | Symbols: | signal recognition particle receptor ... 3483 0.0
> AT4G30600.1 | Symbols: | signal recognition particle receptor
alpha subunit family protein | chr4:14937840-14941018 REVERSE
LENGTH=2309
Length=2309
Score = 3483 bits (1886), Expect = 0.0
Identities = 2139/2252 (95%), Gaps = 53/2252 (2%)
Strand=Plus/Plus
Query 1 AGAAACGACAGGAACCAAGGGTAACGAACTTGGAGATCGAAGATGTTAGAACAGCTATTA 60
|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||
Sbjct 61 AGAAACGACAGGAACCAAGGGTTACGAAATTGAAGATCGAAGATGTTAGAACAGCTTTTA 120
Query 61 ATCTTTACCCGAGGAGGATTAATCCTTTGGACATGCAAAGAGATTGGTAATGCTTTGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 ATCTTTACCCGAGGAGGATTAATCCTTTGGACATGCAAAGAGATTGGTAATGCATTAAAA 180
Query 121 GGATCACCCATCGACACTTTGATCCGGTCTTGTCTCCTTGAGGAACGATCTGGTGCTGTT 180
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GGATCACCTATCGATACTTTGATCCGGTCCTGTCTCCTTGAGGAACGATCTGGTGCTGTT 240
Query 181 TCGTTTAACTACGATGCTCCTGGTGCTGCCTACACTCTCAAGTGGACGTTTCACAATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTTTAACTACGATGCTCCTGGTGCTGCCTACACTCTCAAGTGGACGTTTCACAATGAT 300
Query 241 CTTGGACTTGTCTTTGTCGCTGTTTATCAGCGGATTCTCCACTTGCTTTATGTCGATGAT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 301 CTTGGACTTGTCTTTGTCGCTGTTTATCAGCGGATTCTCCATTTGCTTTATGTGGATGAT 360
Query 301 TTGCTTTCTATGGTCAAGCAAAGCTTCTCTGAGATCTATGATCCTAAACGGATGGCTTAT 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TTGCTTTCTATGGTCAAGCAAAGCTTCTCTGAGGTCTATGATCCTAAACGGATGGCTTAT 420
Query 361 GATGATTTCGATGAGACTTTTAGGCAGCTTAGGATTGAAGCTGAAGCTCGTGCTGAGGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGATTTCGATGAGACTTTTAGGCAGCTTAGGATTGAAGCTGAAGCTCGTGCTGAGGAA 480
Query 421 TTGAGGAAGACTAAGCAAGTTGGAAAGCCTGTGAGCAGTGTTAAGAAGCAAGGGCAGGTC 480
|||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 481 TTGAGGAAGACTAAGCAAGTGGGGAAGCCTGTGACCAGTGTTAAGAAGCAAGGGCAGGTT 540
Query 481 TCAAAACCTGGACTTGAAGGAGGAAACAAAAGGG-T--TAGTGAAGGTGGCTCGAAGAAA 537
|||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 541 TCAAAACCTGGACTTGAAGGAGGAAACAAAAGGGTTAGTAGTGAAGGTGGTTCGAAGAAA 600
Query 538 GATGAT-G-G-TGATGGTAATAAGGCCAAAGTTAGTACCTTGACTAATGGTCATTCTAAT 594
|||||| | | || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GATGATGGCGATGGTGGTAATAAGGCCAAAGTTAGTACCTTGACTAATGGTCATTCCAAT 660
Query 595 GGGAATCATCAAATGGAAGATGATTCTCAGGAGAC---TGATCTTGCTAACGGGAAAGAA 651
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 GGGAATCATCAAATGGAAGATGATTCTCAGGAGACTAATGATCTTGCTAACGGGAAAGAA 720
Query 652 AACACGAGTTCTAATGTTGCTGTTGATTTAAGTAAACTTCAGAAACTAAGAAGTAAAGGA 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 AACACGAGTTCTAATGTTGCTGTTGATTTAAGTAAACTTCAGAAACTTAGAAGTAAAGGA 780
Query 712 GTAAGAGGTAGAGGAGGTGTAAGGAAAACTGACAGTATAGGTAATAAGAGTTCCAAGGTT 771
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 781 GTCAGAGGTAGAGGAGGTGTAAGGAAAACTGACAGTATAGGTAATAAGAGTTCCAA-G-- 837
Query 772 GCTGCTGCGGAGCCAGCCAAAAAGGCGACAAAGAAAAATAGGGTTTGGGATGATGCGGCT 831
| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 G-T--AGCGGAACCAGCCAAAAAGGCGACAAAGAAAAACAGGGTTTGGGATGATGCGGCT 894
Query 832 CCCAAACAATCGAAATTGGACTTCACGGATTCCATCGATGAAAATGGGAACAATGATCAT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCCAAACAATCGAAATTGGACTTCACGGATTCCATCGATGAAAATGGGAACAATGATCAT 954
Query 892 GTAGATATTGTGGCTGCTGACCAAGGAGAAAGTATGATGGACAAGGAAGAGGTTTTCAGC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTAGATATTGTGGCTGCTGACCAAGGAGAAAGTATGATGGACAAGGAAGAGGTTTTCAGC 1014
Query 952 AGTGATAGTGAAAGTGAAGATGATGACGAACCAGGAAGTGATGAGAAGCCTGCTGAGGCT 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1015 AGTGATAGTGAAAGTGAAGATGATGACGAACCAGGAAGTGATGAGAAGCCTGCTCAGGCT 1074
Query 1012 AAGAAAAAGGGATGGTTTTCTTCTGTTTTCCAGAGTATTACTGGGAAAGCGAATCTTGAA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGAAAAAGGGATGGTTTTCTTCTGTTTTCCAGAGTATTACTGGGAAAGCGAATCTTGAA 1134
Query 1072 AGGACAGACCTTGGACCGGCATTGAAAGCTCTGAAGGAACGGCTCATGACCAAGAATGTG 1131
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGGACAGACCTTGGACCGGCGTTGAAAGCTCTGAAGGAACGGCTCATGACCAAGAATGTG 1194
Query 1132 GTTGAAGAGATTGCTGAGAAGCTTTGTGAATCAGTGGAAGCTAGTCTTGAAGGAAAGAAG 1191
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 GCAGAAGAGATTGCTGAGAAGCTTTGCGAATCAGTGGAAGCTAGTCTTGAAGGAAAGAAA 1254
Query 1192 TTGTCATCGTTCACCAGGATCTCTTCAACCGTTCAGGCAGCGATGGAGGATGCTCTGGTT 1251
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTGTCATCTTTCACCAGGATCTCTTCAACCGTTCAGGCAGCGATGGAGGATGCTCTGGTT 1314
Query 1252 CGTATATTGACTCCGAGACGCTCCATTGACATATTGAGAGATGTTCATGCTGCCAAAGAA 1311
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1315 CGTATATTGACTCCAAGACGCTCCATTGATATATTAAGAGATGTTCATGCTGCCAAAGAA 1374
Query 1312 CAGAGGAAACCTTATGTGGTTGTGTTTGTTGGAGTCAATGGAGTTGGGAAATCCACCAAT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CAGAGGAAACCTTATGTGGTTGTGTTTGTTGGAGTCAATGGAGTTGGGAAATCCACCAAT 1434
Query 1372 CTGGCCAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGATGGCTGCTTGT 1431
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTCGCTAAAGTGGCGTATTGGCTTCAGCAGCATAAGGTCAGTGTAATGATGGCTGCTTGT 1494
Query 1432 GACACATTCCGTTCTGGAGCTGTTGAGCAGTTACGGACTCATGCTCGTAGGTTACAGATA 1491
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GACACTTTCCGTTCTGGAGCTGTTGAGCAGTTACGGACTCATGCTCGTAGGTTACAGATA 1554
Query 1492 CCGATATTTGAAAAAGGCTATGAAAAGGATCCAGCTGTAGTTGCTAAAGAAGCCATACAA 1551
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1555 CCGATATTTGAAAAGGGTTATGAAAAGGATCCAGCAGTAGTTGCTAAAGAAGCCATACAA 1614
Query 1552 GAAGCAACTCGAAATGGATCCGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGAT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GAAGCAACTCGAAATGGATCCGATGTTGTTCTTGTTGACACAGCTGGTCGGATGCAGGAT 1674
Query 1612 AATGAACCTTTGATGAGAGCACTCTCAAAGCTCATCAACCTTAATCAGCCAGACTTAGTC 1671
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1675 AATGAACCTTTGATGAGAGCACTCTCAAAGCTCATCAACCTTAATCAGCCGGACTTGGTC 1734
Query 1672 TTGTTTGTTGGGGAAGCTCTTGTTGGAAACGATGCAGTAGACCAGCTCTCAAAGTTTAAT 1731
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1735 TTGTTTGTTGGTGAAGCTCTTGTTGGAAACGATGCAGTAGACCAGCTCTCGAAGTTCAAT 1794
Query 1732 CAGAAACTTTCGGATCTCTCGACTTCTGGGAACCCAAGACTGATCGATGGAATCTTACTG 1791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 CAGAAACTTTCGGATCTCTCGACTTCTGGGAACCCAAGACTGATCGATGGAATCTTACTT 1854
Query 1792 ACAAAGTTTGATACCATTGACGACAAGGTTGGAGCAGCGTTATCTATGGTTTACATATCG 1851
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1855 ACAAAGTTTGATACCATTGACGACAAGGTCGGAGCAGCGTTGTCTATGGTTTACATATCG 1914
Query 1852 GGATCACCGGTTATGTTCGTGGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTTAAT 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GGATCACCGGTTATGTTCGTGGGTTGTGGCCAGTCTTACACTGACCTGAAGAAGCTTAAT 1974
Query 1912 GTCAAAGCCATAGTGAAGACACTTCTCAAGTGATCTCCTGTtcatcatcatcatcatca- 1970
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1975 GTCAAAGCCATAGTCAAGACACTTCTCAAGTGATCTCCTCTTCATCATCATCATCATCAC 2034
Query 1971 tcatcatcatTACCATCTACTATCAACAATCAATG-Ct----------g-t-t-gttttt 2016
| ||||||||||||||||||||||||||||||||| || | | | ||||||
Sbjct 2035 T-ATCATCATTACCATCTACTATCAACAATCAATGTCTTATCCATCATGCTGTTGTTTTT 2093
Query 2017 ggtttttgatttgaagacgatttctctttggaagtgttgtgttttctttAAAACTCAAAA 2076
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 GGTTTTTTATTTGAAGACGGTTTCTCTTTGGAAGTGTTGTGTTTTCTTTAAAACTCAAAA 2153
Query 2077 GACTGGAGTCTCAAAAA-TACCATCCCATGAC---A-A-----C----T---TTT-GTTT 2118
|||||||||| |||||| |||||||||||||| | | | | ||| ||||
Sbjct 2154 GACTGGAGTCGCAAAAAATACCATCCCATGACTTTATATGATGCAACGTAACTTTTGTTT 2213
Query 2119 TGAATTAAAAGACTAATAATCATGTGAAATCGTGGCAttttttgtttt-tt-ttttAAA- 2175
| ||||||| || ||||||||||||||||| ||| ||| |||| |||| || |||||||
Sbjct 2214 TAAATTAAA-GATTAATAATCATGTGAAATAGTGTCATCTTTTATTTTGTTATTTTAAAT 2272
Query 2176 AATTATAACCAAATGAAGATTGAAGTTAGCAT 2207
|||||||||||||||||||||||| |||||||
Sbjct 2273 AATTATAACCAAATGAAGATTGAATTTAGCAT 2304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109587789735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5