BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491698
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30530.1 | Symbols: | Class I glutamine amidotransferase-li... 1375 0.0
> AT4G30530.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr4:14920534-14922494 FORWARD LENGTH=1032
Length=1032
Score = 1375 bits (744), Expect = 0.0
Identities = 890/956 (93%), Gaps = 27/956 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGGTGGAGCAAAAAAGATACGCTCTGTTTCTAGCGACTTTGGACTCAGAGTT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 65 AAAAAAAATGGTGGAGCAAAAGAGATACGCTCTGTTTCTAGCGACTTTGGACTCAGAGTT 124
Query 61 CGTGAAGAAAACTTACGGAGGATACCACAACGTGTTCGTGACAACGTTCGCAGACGAAGG 120
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 125 CGTGAAGAAAACTTACGGAGGATACCACAACGTGTTCGTGACGACGTTCGGAGACGAAGG 184
Query 121 AGAGCATTGGGACTCCTTTAGAGTCGTCAGCGGTGAGTTTCCTGACGAGAAAGATCTTGA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 185 AGAGCATTGGGACTCCTTTAGAGTCGTCAGCGGAGAGTTTCCTGACGAGAAAGATCTGGA 244
Query 181 GAAATACGATGGCTTCGTTATCAGTGGAAGCTCTCACGATGCCTTTGAGAATCATGATTG 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 245 GAAATACGATGGCTTCGTTATCAGCGGAAGCTCTCACGATGCCTTTGAGAATGATGATTG 304
Query 241 GATCCTTAAGCTCTGTGATATCGTCAAGAAAATCGACGAGATGAAGAAGAAAATTCTTGG 300
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 305 GATCCTTAAGCTCTGTGATATTGTCAAGAAAATTGATGAGATGAAGAAGAAAATTCTTGG 364
Query 301 CATCTGTTTTGGTCATCAGATCATAGCCAGGGTAAGGGGAGGAACAGTCGGAAGAGCAA- 359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CATCTGCTTTGGTCATCAGATCATAGCCAGGGTAAGGGGAGGAACAGTCGGAAGAGCAAA 424
Query 360 GAAAGGGACCAGAACTAAAACTTGGAGACATAACCATCGTGAAGGATGCGATTACGCCGG 419
||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 425 GAA-GGGACCAGAACTTAAACTTGGAGACATAACCATCGTCAAGGATGCGATTACGCCTG 483
Query 420 GAAGTTACTTCGGAAACGAGATTCCTGATAGCATGGCGATCATCAAATGCCACCAGGACG 479
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 484 GAAGTTACTTCGGAAACGAGATTCCTGATAGCATAGCGATCATCAAATGTCACCAGGACG 543
Query 480 AGGTGTTGGTGCTGCCGGAAACTGCTAAAGTGCTAGCTTATTCCACCAACTACGAGGTAG 539
| |||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| |
Sbjct 544 AAGTGTTGGTGCTGCCCGAAACTGCTAAAGTGCTTGCGTATTCCAAGAACTACGAGGTGG 603
Query 540 AGATGT-TCTCGATTGAGGATCATTTGTTCTGTATTCAAGGACATCCTGAGTATAACAAA 598
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 604 AGATGTAT-TCGATTGAGGATCATTTGTTCTGTATCCAAGGACATCCTGAGTATAACAAA 662
Query 599 GAGATTCTCTTCGAGATTGTTGATCGTGTTCTTGCTCAAGGCTTCGTCAAGCAAGAATTT 658
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 663 GAGATTCTCTTCGAGATTGTTGATCGTGTTCTTGCTCTAGGCTACGTCAAGCAAGAATTT 722
Query 659 GCTGATGCGGCTAAGGCAACGATGGAGAACAGGGGAGCAGACAGGAAGCTTTGGGAAACG 718
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 723 GCTGATGCGGCTAAGGCAACGATGGAGAATAGGGGAGCAGACAGGAAGCTTTGGGAGACG 782
Query 719 ATTTGCAAGAACTTCCTCAAAGGCAGAGTTCCAACTAACTAGTTTCACTTCCAAATTATC 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 783 ATTTGCAAGAACTTCCTCAAAGGCAGAGTTCCAACTAACTAGTTTCACTCCCAAATTATC 842
Query 779 TATTTGGCTCTTGTCATATTGGAACAATATTTATGGATTTATTATCTTGCTTTATTTCTG 838
||||||||||||||||||||| |||||| || ||||||||| |||||||||||||| |
Sbjct 843 TATTTGGCTCTTGTCATATTGAAACAAT-TTG-TGGATTTATGATCTTGCTTTATTTTT- 899
Query 839 AT-CATTGTATAACTT-AT-TTA-TCTCGGCGTGACTTATTTGTGTGTTATTATACCCAT 894
|| || |||||||| || ||| |||||||||||||||||||||| | || | || |
Sbjct 900 ATTCAATGTATAACGACATATTAATCTCGGCGTGACTTATTTGTGT-T-AT-A--CC-A- 952
Query 895 GGGCCATGATAAATGAATAAGAAGAA---A--CTATTTAAAACCATAATTGCTGTT 945
| |||||||||||||||||||| | ||||||||| |||||||||| |||
Sbjct 953 GT----TGATAAATGAATAAGAAGAACCTAAGCTATTTAAAGCCATAATTGCAGTT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5