BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491701
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30490.1 | Symbols: | AFG1-like ATPase family protein | chr... 2608 0.0
> AT4G30490.1 | Symbols: | AFG1-like ATPase family protein | chr4:14899034-14902144
REVERSE LENGTH=1947
Length=1947
Score = 2608 bits (1412), Expect = 0.0
Identities = 1610/1704 (94%), Gaps = 20/1704 (1%)
Strand=Plus/Plus
Query 175 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGATCATCATCTCTCAGTAGA 234
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 238 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGGTTATCATCTCTCAGTAGA 297
Query 235 ATTAGATGGGCTCTGAGGAACAATCAAGAACGCTATTCTTCAACTTTATACTCGAAAAGC 294
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 298 ATTAGATGGGCTCTAAGGAACAATCAAGAACGTTATTCTTCAACTTTCTACTCCAAAAGC 357
Query 295 CGTAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGGTGAATACAAACACTGATAAT 354
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 CGCAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGCTGAATACAAACACTGATAAT 417
Query 355 TCAAGTTTGTATTCGAGGTTAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCT 414
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAAGTTTGTATTCAAGGTCAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCA 477
Query 415 GCTGGTCCTGCTACCACTAGGCTCACCGTCTCAGATGTGAATAGAACAGGCCCGCTTGTT 474
|||| ||||||||| |||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 478 GCTGATCCTGCTACTACTAGGGTCACCGTCTCAGATGTGAATAGAACAGGTCCTCTTGTT 537
Query 475 GAGTATGAAAGAAGAATCAATGATGGTGAACTCATGACTGGTGATATCTGCCAAATTGGT 534
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GAGTATGAGAGAAGAATCAGTAATGGTGAACTCATGACTGGTGATATCTGCCAAATTAGT 597
Query 535 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACTTGTCGT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACATGTCGT 657
Query 595 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 717
Query 655 ATGCCGCAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGCACA 714
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 ATGCCACAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGTACA 777
Query 715 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAATTGCCTTGTACTTGGAAGAAGCAG 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 778 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAACTGCCTTGTACTTGGAAGAAGCAG 837
Query 775 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 897
Query 835 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 957
Query 895 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTGATACTAAACCGACTCTTTGGA 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTAATACTAAACCGACTCTTTGGA 1017
Query 955 CATCTCTTTAGCAATGGCGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1014
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CATCTGTTTAGCAATGGTGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1077
Query 1015 TATGAAGGAGGACTCCAAAGGGATCTCTTCCTACCTTTTATCTCCTCATTGAAGGAACGA 1074
|||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||
Sbjct 1078 TATGAAGGAGGACTCCAAAGAGATCTGTTCCTACCTTTCATTTCTTCATTGAAGGAACGA 1137
Query 1075 AGTGTGGTTCATGAGATCGGCTCAGAGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1134
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1138 AGTGTGGTTCATGAGATCGGTTCAGCGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1197
Query 1135 GGATTCTACTTCATCGGTAAAGATCTTTCGACCCTATTGAAACAGAAGTTCCAACAACTG 1194
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 1198 GGATTCTACTTCATTGGTAAAGATCTTTCGACCCTTTTGAAACAGAAGTTCCGACAATTG 1257
Query 1195 ATTGGAGACAATGTTGTTGCGCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATTGGAGACAATGTTGTTGCCCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1317
Query 1255 CAGATTCCTTTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGTTATGTGACCGA 1314
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 CAGATTCCATTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGCTATGTGACCGA 1377
Query 1315 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1437
Query 1375 GGAATTCCAGTGTTCGGGCTTCATAACCGCACTGCTGCGTATAGATTCGTCACGCTAGTC 1434
| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1438 GAAATTCCAGTGTTTGGGCTTCATAACCGTACTGCTGCATATAGATTCGTCACGCTAGTC 1497
Query 1435 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGCACAGCTGAAGCAAGTCCTTTAGAA 1494
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1498 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGTACAGCTGAAGCAAATCCTCAAGAA 1557
Query 1495 CTCTTGGAAAAGATTGTAACAATCTCAGAGGCGAAATCGATGGCTCCAAGAACATCATCG 1554
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1558 CTTTTGGAAAAGATTATAACAATCTCAGAGGCGAAATCGATGGGTCCAAGAACATCATCA 1617
Query 1555 AGATCAAGAAAGAACGATGTGACTGAGCTCTGCGTAGATAACGAATTAGGTTTCGCAAAA 1614
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 AGATCAAGAAAGAACGATGTTACTGAGCTCTGCGTGGATAACGAATTAGGTTTCGCAAAA 1677
Query 1615 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCAGCATGCC 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCACCATGCC 1737
Query 1675 ATAACACAGAATCTGTAACACTGACACAAGACCCTTGATGGTTTTTCATGGGAGTC---A 1731
|||||||| ||||||||||||| | || |||||||||||| || ||||||||| || |
Sbjct 1738 ATAACACACAATCTGTAACACTCATACTAGACCCTTGATGATTCTTCATGGGATTCTTCA 1797
Query 1732 AT-AG--C-T-T----G-TT---GTATTTTATGTATCACACCAACAGATTGATACGAACC 1778
|| | | | | | || ||||||| |||||||||||||||||||||| ||||||
Sbjct 1798 ATTAAATCCTATAATAGCTTATTGTATTTTCTGTATCACACCAACAGATTGATCCGAACC 1857
Query 1779 ATGAAAAGGAAATAATAT--CCATTGTTGTAATATTGAATTTTTTATTTACTGCTATATT 1836
||||||||||||| | | |||||||||||| |||||||||| |||||||||||||||
Sbjct 1858 ATGAAAAGGAAATTGTTTTTCCATTGTTGTAACATTGAATTTTCGATTTACTGCTATATT 1917
Query 1837 AAATCCAAAAGAA-TTGCATCTTT 1859
||||| || ||| ||||||||||
Sbjct 1918 AAATCTAAT-GAAATTGCATCTTT 1940
Score = 180 bits (97), Expect = 5e-44
Identities = 114/121 (94%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCT--ATCTCTCTTATCC 58
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCTCTATCTCTCTTATCC 60
Query 59 AGATTTATCATCATCCATTACATATAAACACATCAAACTTAACTTTTCAATATTCTAATT 118
|||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 AGATTTATCATCGTC-ATTACATATAAACA--TCAAACTTAACTTTTCAATATTCTCATT 117
Query 119 C 119
|
Sbjct 118 C 118
Score = 78.7 bits (42), Expect = 2e-13
Identities = 52/56 (93%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 112 TCTAATTCTTATCCGGATCCGATTTCTC--ATACAAAGATTTTGTTTTTCTT-TTG 164
|||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 136 TCTAATTCTTATCCGGATCCGATTTCTCTCATACAAAGATTCTGTTTTTCTTCTTG 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92017598985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5