BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491701 Length=1859 Score E Sequences producing significant alignments: (Bits) Value AT4G30490.1 | Symbols: | AFG1-like ATPase family protein | chr... 2608 0.0 > AT4G30490.1 | Symbols: | AFG1-like ATPase family protein | chr4:14899034-14902144 REVERSE LENGTH=1947 Length=1947 Score = 2608 bits (1412), Expect = 0.0 Identities = 1610/1704 (94%), Gaps = 20/1704 (1%) Strand=Plus/Plus Query 175 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGATCATCATCTCTCAGTAGA 234 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 238 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGGTTATCATCTCTCAGTAGA 297 Query 235 ATTAGATGGGCTCTGAGGAACAATCAAGAACGCTATTCTTCAACTTTATACTCGAAAAGC 294 |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 298 ATTAGATGGGCTCTAAGGAACAATCAAGAACGTTATTCTTCAACTTTCTACTCCAAAAGC 357 Query 295 CGTAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGGTGAATACAAACACTGATAAT 354 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 358 CGCAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGCTGAATACAAACACTGATAAT 417 Query 355 TCAAGTTTGTATTCGAGGTTAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCT 414 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCAAGTTTGTATTCAAGGTCAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCA 477 Query 415 GCTGGTCCTGCTACCACTAGGCTCACCGTCTCAGATGTGAATAGAACAGGCCCGCTTGTT 474 |||| ||||||||| |||||| |||||||||||||||||||||||||||| || |||||| Sbjct 478 GCTGATCCTGCTACTACTAGGGTCACCGTCTCAGATGTGAATAGAACAGGTCCTCTTGTT 537 Query 475 GAGTATGAAAGAAGAATCAATGATGGTGAACTCATGACTGGTGATATCTGCCAAATTGGT 534 |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 538 GAGTATGAGAGAAGAATCAGTAATGGTGAACTCATGACTGGTGATATCTGCCAAATTAGT 597 Query 535 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACTTGTCGT 594 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 598 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACATGTCGT 657 Query 595 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 717 Query 655 ATGCCGCAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGCACA 714 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 718 ATGCCACAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGTACA 777 Query 715 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAATTGCCTTGTACTTGGAAGAAGCAG 774 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 778 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAACTGCCTTGTACTTGGAAGAAGCAG 837 Query 775 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 897 Query 835 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 957 Query 895 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTGATACTAAACCGACTCTTTGGA 954 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 958 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTAATACTAAACCGACTCTTTGGA 1017 Query 955 CATCTCTTTAGCAATGGCGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1014 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 CATCTGTTTAGCAATGGTGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1077 Query 1015 TATGAAGGAGGACTCCAAAGGGATCTCTTCCTACCTTTTATCTCCTCATTGAAGGAACGA 1074 |||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| Sbjct 1078 TATGAAGGAGGACTCCAAAGAGATCTGTTCCTACCTTTCATTTCTTCATTGAAGGAACGA 1137 Query 1075 AGTGTGGTTCATGAGATCGGCTCAGAGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1134 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1138 AGTGTGGTTCATGAGATCGGTTCAGCGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1197 Query 1135 GGATTCTACTTCATCGGTAAAGATCTTTCGACCCTATTGAAACAGAAGTTCCAACAACTG 1194 |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| || Sbjct 1198 GGATTCTACTTCATTGGTAAAGATCTTTCGACCCTTTTGAAACAGAAGTTCCGACAATTG 1257 Query 1195 ATTGGAGACAATGTTGTTGCGCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1254 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1258 ATTGGAGACAATGTTGTTGCCCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1317 Query 1255 CAGATTCCTTTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGTTATGTGACCGA 1314 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1318 CAGATTCCATTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGCTATGTGACCGA 1377 Query 1315 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1437 Query 1375 GGAATTCCAGTGTTCGGGCTTCATAACCGCACTGCTGCGTATAGATTCGTCACGCTAGTC 1434 | |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1438 GAAATTCCAGTGTTTGGGCTTCATAACCGTACTGCTGCATATAGATTCGTCACGCTAGTC 1497 Query 1435 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGCACAGCTGAAGCAAGTCCTTTAGAA 1494 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| Sbjct 1498 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGTACAGCTGAAGCAAATCCTCAAGAA 1557 Query 1495 CTCTTGGAAAAGATTGTAACAATCTCAGAGGCGAAATCGATGGCTCCAAGAACATCATCG 1554 || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1558 CTTTTGGAAAAGATTATAACAATCTCAGAGGCGAAATCGATGGGTCCAAGAACATCATCA 1617 Query 1555 AGATCAAGAAAGAACGATGTGACTGAGCTCTGCGTAGATAACGAATTAGGTTTCGCAAAA 1614 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1618 AGATCAAGAAAGAACGATGTTACTGAGCTCTGCGTGGATAACGAATTAGGTTTCGCAAAA 1677 Query 1615 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCAGCATGCC 1674 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1678 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCACCATGCC 1737 Query 1675 ATAACACAGAATCTGTAACACTGACACAAGACCCTTGATGGTTTTTCATGGGAGTC---A 1731 |||||||| ||||||||||||| | || |||||||||||| || ||||||||| || | Sbjct 1738 ATAACACACAATCTGTAACACTCATACTAGACCCTTGATGATTCTTCATGGGATTCTTCA 1797 Query 1732 AT-AG--C-T-T----G-TT---GTATTTTATGTATCACACCAACAGATTGATACGAACC 1778 || | | | | | || ||||||| |||||||||||||||||||||| |||||| Sbjct 1798 ATTAAATCCTATAATAGCTTATTGTATTTTCTGTATCACACCAACAGATTGATCCGAACC 1857 Query 1779 ATGAAAAGGAAATAATAT--CCATTGTTGTAATATTGAATTTTTTATTTACTGCTATATT 1836 ||||||||||||| | | |||||||||||| |||||||||| ||||||||||||||| Sbjct 1858 ATGAAAAGGAAATTGTTTTTCCATTGTTGTAACATTGAATTTTCGATTTACTGCTATATT 1917 Query 1837 AAATCCAAAAGAA-TTGCATCTTT 1859 ||||| || ||| |||||||||| Sbjct 1918 AAATCTAAT-GAAATTGCATCTTT 1940 Score = 180 bits (97), Expect = 5e-44 Identities = 114/121 (94%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCT--ATCTCTCTTATCC 58 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCTCTATCTCTCTTATCC 60 Query 59 AGATTTATCATCATCCATTACATATAAACACATCAAACTTAACTTTTCAATATTCTAATT 118 |||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 61 AGATTTATCATCGTC-ATTACATATAAACA--TCAAACTTAACTTTTCAATATTCTCATT 117 Query 119 C 119 | Sbjct 118 C 118 Score = 78.7 bits (42), Expect = 2e-13 Identities = 52/56 (93%), Gaps = 3/56 (5%) Strand=Plus/Plus Query 112 TCTAATTCTTATCCGGATCCGATTTCTC--ATACAAAGATTTTGTTTTTCTT-TTG 164 |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct 136 TCTAATTCTTATCCGGATCCGATTTCTCTCATACAAAGATTCTGTTTTTCTTCTTG 191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92017598985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5