BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491703
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat ... 1746 0.0
> AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:14897353-14899121 FORWARD
LENGTH=1165
Length=1165
Score = 1746 bits (945), Expect = 0.0
Identities = 1080/1143 (94%), Gaps = 18/1143 (2%)
Strand=Plus/Plus
Query 1 CATCTTGGA-CCTTCTTCTTCTC--T--A--GCT-TGGATTCTGA---GATTTCTTAGGA 49
|||||| || ||||||||||||| | | ||| |||||||||| ||||| | ||||
Sbjct 8 CATCTT-GACCCTTCTTCTTCTCTATCGAGTGCTCTGGATTCTGATTTGATTTGTGAGGA 66
Query 50 AAGCTAGATCGACGATCGAATAAGTCTCGCGTTGAAATCTCTCTTTGTGCAAGCAAACTC 109
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 67 AAGCTAGATCGACGATCGAATAAGTCTCGCGCTGAAATCTATCTTTGTGCAAGCAAACTC 126
Query 110 TCGAAGAACCCTAGATTGAAGATGGTACTGATCGAATCAAGTGAGGGTGAGGATGAGATC 169
|||||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 127 TCGAAGAACCTTAGATTGAAGATGGTACTGATCGAATCAAGTGAGAGTGAAGACGAGATC 186
Query 170 CTCATCAAAAACGAACCAAAGCCATCGTCTTCATCCTCACCGCAACCCATGGAGACGAAA 229
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 187 CTCATCAAAAACGAACCAAAGCCAGCGTCTTCATCCTCACCGCAACCCACGGAGACGAAA 246
Query 230 CAAGTCGACGGAGATGATTCCGACGGTTTCGAGACTGCCAGCGAACGTGAAGTTAGCGAT 289
||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||
Sbjct 247 CAAGTCGACGGAGATGATTCCGATGGGTTCGAAACTGCCAGCGAACGTGAAATTAGCGAT 306
Query 290 GAAGAAGGAGAGGAAGATGGTACCAAAAACGACGCCGTCACGAGTCAGGAGGAACCACAA 349
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 307 GAAGAAGGAGAGGAAGATGGTACCAAAAATGACGCCGTCACGAGTCAGGAGGAACCACAG 366
Query 350 CACTCGGAGACGAAGGGAGAGCATG-TTGAGCTAATGAGTGAAGGAGAAGTCATAGTCGA 408
|||||||||| ||||| |||||| | |||||||||||||||||||||||| |||||||||
Sbjct 367 CACTCGGAGAAGAAGGAAGAGCA-GATTGAGCTAATGAGTGAAGGAGAAGCCATAGTCGA 425
Query 409 CGACGGATCAATCCAGGAGAAAGCTATGGCAGAAGCAAATGAGGCTAAAGTGGAAGGAAA 468
||||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 426 CGACGGATCAAACAAGGAGAAAGCTTTGGCAGAAGCAAATGAGGCTAAAGCGGAAGGAAA 485
Query 469 TAAACTGTTCGTTAATGGCCTTTATGAAGAAGCATTGTCAAAGTATGCTTGTGCTTTAGA 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 486 TAAACTGTTCGTTAATGGCCTTTATGAAGAAGCATTGTCAAAGTATGCTTTTGCTTTAGA 545
Query 529 GCTTGTTCAGGAGTTTCCTGAGTCTATAGAGCTTCGATCCATATGCCATTTAAACAGAGG 588
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 546 GCTTGTTCAGGAGTTACCTGAGTCTATAGAGCTTCGATCCATATGCTATTTAAACAGAGG 605
Query 589 TGTATGTTTCCTCAAATTGGGTAAATGTGAAGAAACGATCAAGGAATGCACAAAAGCCTT 648
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 606 TGTATGTTTCCTCAAATTGGGTAAATGTGAAGAAACAATCAAGGAATGCACAAAAGCCTT 665
Query 649 AGAGCTAAATCCTACCTACACTAAGGCCTTGGTTCGAAGGGCAGAAGCACACGAGAAACT 708
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 666 AGAGCTAAATCCTACCTACAATAAGGCCTTGGTTCGAAGGGCTGAAGCACACGAGAAACT 725
Query 709 TGAACATTTCGAAGATGCTGTCACGGACCTGAAGAAGATCTTAGAACTTGATCCTTCAAA 768
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGAACACTTCGAAGATGCTGTCACGGACCTGAAGAAGATCTTAGAACTTGATCCTTCAAA 785
Query 769 TGATCAAGCTAAGAAAGGGATTCGACGTCTTGAACCTCTTGCTGCTGAGAAGCGAGAAAA 828
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGATCAAGCTAGGAAAGGGATTCGACGTCTTGAACCTCTTGCTGCTGAGAAGCGAGAAAA 845
Query 829 GATGAAAGAAGAGGCTATAACTAAGCTGAAGGAGATGGGAAACTCGATTTTGGGTCGATT 888
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GATGAAAGAAGAAGCTATAACTAAGCTGAAGGAGATGGGAAACTCGATTTTGGGTCGATT 905
Query 889 TGGGATGAGTGTGGACAACTTCAAGGCTGTTAAAGATCCCAACACTGGCTCCTACTCTCT 948
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 906 TGGAATGAGTGTGGACAACTTTAAGGCGGTTAAAGATCCCAACACTGGCTCCTACTCTCT 965
Query 949 TTCTTTCCAAAACTAGTATAATATCGTAGTGG-TCTTGATGTATTGCTTCTACCACTTAA 1007
||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 966 TTCTTTCCAAAACTAGTTTAATATCGTAGTTGCTCTTGATGTATTGCTTCTACCACTTAA 1025
Query 1008 -TGTTTAGCAACAATATGGTTAGTATTGCAATGTGTTATTGTTCCTGATGCATTCATGAA 1066
|||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1026 ATGTTTAGCAACAATCTGGTTAATATTGCAATGTGTTATTGTTCTTGATGCATACATGAA 1085
Query 1067 AAGATGCAATT-CTTTTGGATTTAATATAGCAGTAAATAAAAAATTCAATGTTACAACAA 1125
||||||||||| | || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1086 AAGATGCAATTTCATTAG-ATTTAATATAGCAGTAAATCGAAAATTCAATGTTACAACAA 1144
Query 1126 TGG 1128
|||
Sbjct 1145 TGG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5