BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491707
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30450.1 | Symbols: | glycine-rich protein | chr4:14886027-... 894 0.0
> AT4G30450.1 | Symbols: | glycine-rich protein | chr4:14886027-14886675
REVERSE LENGTH=649
Length=649
Score = 894 bits (484), Expect = 0.0
Identities = 596/648 (92%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 1 CTAATCAAGTTACACTATAAACTCAAATACATCGATCGGCAAGTCTTAACACACGAAGAT 60
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 3 CTAATCAAGTTACACTATAAACTCAAACACATCTATCGGCAAGTCTTAACACACGAAGAT 62
Query 61 TTCCAAAATGGCTAGGGCCCAAGGTCTTTTTCTTCTTGGTTTATTAGTTATTTCAAGTTT 120
|||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 63 TTCCAAAATGGCTAAGGCCGAAGGTCTTTTTCTTCTTGGTTTAGTAGTTATTTCAAGTTT 122
Query 121 AGTTATGTTAACCGAGAGCCGAGTCGCAAGAAAAGACTTGGGGCTTGACCTAGGTGGGAT 180
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 123 AGTTATGTTAACCGAGAGCCGACTCGCAAGAAAAGACTTGGGGATTGACCTAGGTGGGAT 182
Query 181 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 242
Query 241 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCTAGCTCGTCATC 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 243 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCCAGCTCATCATC 302
Query 301 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCTGGTTCATTTGCTGG 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 303 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCCGGTTCATTTGCTGG 362
Query 361 ATCTAAAGCTGGATCAGGATCTGGTAACTAAATTATAATATGCAGTTAATTTTCTACTTA 420
|||| |||||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct 363 CTCTAGAGCTGGATCAGGATCTGGTAACTAAATTATAATA---A-TTACTTTTCGACTTA 418
Query 421 AAGTGTGAAACTATAAGTATGTTGTATGTTGTTGGTTTGTCGTAATTAGTATCGTATGTA 480
||||||||||| ||||||||||| |||||| |||||| |||||| ||| |||||||||||
Sbjct 419 AAGTGTGAAACAATAAGTATGTTTTATGTTTTTGGTTCGTCGTAGTTAATATCGTATGTA 478
Query 481 CGAAATTGGA-TGAATAAACTGTCGCCATAAGTTATGTTTTATTTGAG----TGTGT--A 533
|| ||| ||| ||||||| ||| || ||||||||||||| |||||| ||||| |
Sbjct 479 CGGAAT-GGAATGAATAATTTGTTACCGTAAGTTATGTTTTGTTTGAGCGAGTGTGTGTA 537
Query 534 CCTAGCTTACTCTCTCAATTCAAGTATTTTGCCAAAAGTAGAATCTCTTTAGATTTGGAT 593
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 538 CCTAGCTTACTCTCTCTATTCAAGTCTTTCACCAAAAGTAGAATCTCTTTAGATTTGGAA 597
Query 594 CAGAGCATGTTCAATCAATCGTAAATT---GGTAATTTGAATTTGAGA 638
|||| |||||| || ||||||||||| ||||||| ||||||||||
Sbjct 598 CAGAACATGTTTGATTAATCGTAAATTATTGGTAATTCGAATTTGAGA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5