BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491708
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30440.1 | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 |... 2619 0.0
> AT4G30440.1 | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1
| chr4:14881855-14883480 REVERSE LENGTH=1626
Length=1626
Score = 2619 bits (1418), Expect = 0.0
Identities = 1566/1634 (96%), Gaps = 23/1634 (1%)
Strand=Plus/Plus
Query 1 GTCTCCTTGTCCCCTAACCTCACCTGTATATATACTTCTCCGTCTCTTCCTCTTCTCCTT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCCTTGTCCCCTAACCCCACCTGTATATATACTTCTCCGTCTCTTCCTCTTCTCCTT 60
Query 61 AGCAGATGCTTTTTGGaaaaaaaatatatatataccaaaa-aaaaaaTCTGCATCTGTCT 119
||||||||| |||||| |||||| | ||||||||||||| |||| ||||||||||||||
Sbjct 61 AGCAGATGC-TTTTGG-GAAAAAA-A-ATATATACCAAAATAAAAGATCTGCATCTGTCT 116
Query 120 TCTTC--CTTCTTC----CCTCTAAATTTAATTACCCATTTTTCCCGATAAATTTTTGTT 173
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 117 TCTTCTTCTTCTTCATTTCCTCTAAATTTAATTACCCATTTTTTCCGATAAATTTTTGTT 176
Query 174 GAGGAAGAAATTTT-TTGTAAAGAGAGTTTAA-TAAATTATGCCTTCAATAGAAGATGAG 231
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 GAGGAAGAATTTTTGTTGTAAAGAGAGTTTAATTAAATTATGCCTTCAATAGAAGATGAG 236
Query 232 CTGTTTCCGTCAACGCCGGGTAAATTCAAAATTGACCGGTCAAACCGTCAGCTCCACCGT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTGTTTCCGTCAACGCCGGGTAAATTCAAAATTGACCGGTCAAACCGTCAGCTCCACCGT 296
Query 292 TGTTTCGCTTCTACGAGCACCATGTTCCTTTGGGCTCTCTTCCTCATCGCTCTCACCGCT 351
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 TGTTTCGCTTCTACGAGCACCATGTTTCTTTGGGCTCTCTTCCTCATCGCTCTCACCGCT 356
Query 352 TCTTACTTGAGTTTCCAAAGCTTCGTCGATTCCGGTAGCCGTTATCTAACCGCTTCTTGG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTTACTTGAGTTTCCAAAGCTTCGTCGATTCCGGTAGCCGTTATCTAACCGCTTCTTGG 416
Query 412 GGCGGAATCCAGTGGGAGAAACAGGTTCGTACCTCCGCTCAGATCCATCGCTCCGGCGGT 471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCGGCATCCAGTGGGAGAAACAGGTTCGTACCTCCGCTCAGATCCATCGCTCCGGCGGT 476
Query 472 ATCTCCGTTCTCGTTACCGGCGCTACCGGATTCGTCGGTAGCCACGTGTCACTCGCGTTG 531
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 477 ATCTCCGTCCTTGTTACCGGCGCTACCGGATTCGTCGGTAGCCACGTGTCACTTGCCTTG 536
Query 532 AGGAAACGCGGCGATGGTGTCGTTGGACTTGATAATTTCAACAATTACTACGATCCGTCT 591
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGAAACGCGGCGATGGTGTTGTTGGACTTGATAATTTCAACAATTACTACGATCCGTCG 596
Query 592 TTGAAACGTGCTCGCAGATCTATGTTGTCGTCGAGAGGGATCTTCGTCGTTGAAGGAGAT 651
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGAAACGTGCTCGTAGATCTCTGTTGTCGTCGAGAGGGATCTTCGTCGTTGAAGGAGAT 656
Query 652 CTCAACGACGCGAAGCTGTTAGCGAAGCTTTTCGATGTCGTTGCTTTCACTCACGTGATG 711
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 657 CTAAACGACGCGAAGCTGTTAGCAAAGCTTTTCGATGTGGTTGCTTTCACTCACGTGATG 716
Query 712 CATCTCGCTGCTCAAGCCGGAGTTCGATACGCTTTGGAGAATCCTCAATCGTATGTTCAC 771
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 717 CATCTCGCTGCTCAAGCTGGTGTTAGATACGCTTTGGAGAATCCTCAATCGTATGTTCAT 776
Query 772 AGCAACATCGCCGGACTTGTGAATCTTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGCAACATCGCCGGACTTGTGAATCTTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCG 836
Query 832 GCGATTGTTTGGGCTTCATCGAGCTCCGTCTATGGACTCAACGAGAAAGTTCCATTCTCC 891
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 GCGATAGTTTGGGCTTCATCGAGCTCCGTTTATGGACTCAACGAGAAAGTTCCATTCTCT 896
Query 892 GAATCTGACCGTACAGATCAACCGGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAA 951
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAATCTGACCGGACGGATCAACCGGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAA 956
Query 952 GAAATCACCCACACTTATAACCATATTTACGGTCTTGCCATTACCGGTTTAAGATTCTTC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAATCACCCACACTTATAACCATATTTACGGTCTTGCCATTACCGGTTTAAGATTCTTC 1016
Query 1012 ACGGTTTACGGTCCATGGGGTAGACCGGACATGGCTTATTTCTCCTTCACCAGAAACATC 1071
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1017 ACGGTTTACGGACCATGGGGTAGACCGGATATGGCTTACTTCTCCTTCACCAGAAACATC 1076
Query 1072 CTACAAGGTAAACCGATCACAATCTACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGAT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTACAAGGTAAACCGATCACAATCTACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGAT 1136
Query 1132 TTTACATACATCGACGATATAGTCAAAGGCTGCTTAGGATCTCTAGATTCATCGGGTAAA 1191
|| |||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 1137 TTCACATACATCGACGATATAGTGAAAGGATGTTTAGGATCTCTGGATTCATCGGGTAAA 1196
Query 1192 AGTACCGGGTCGGGTGGTAAGAAACGTGGAGCCGCACCGTACCGGATATTTAACCTGGGA 1251
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1197 AGTACCGGGTCGGGTGGTAAAAAACGTGGAGCAGCACCGTACCGGATATTTAACCTGGGA 1256
Query 1252 AACACATCTCCGGTAACGGTACCGATTCTGGTGGATATATTGGAGAAGCATCTAAAGGTG 1311
|||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 AACACATCTCCGGTTACAGTACCGATTCTGGTGGATATATTGGAGAAGCATTTAAAGGTG 1316
Query 1312 AAAGCAAA-ACGGAACTTCGTGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGC 1370
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AAAGCGAAGA-GGAACTTCGTGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGC 1375
Query 1371 TAATATTAGCTCAGCACGAAATGAATTCGGGTATAAACCGACAACCGATTTGGAAACCGG 1430
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CAATATTAGCTCAGCCCGAAATGAATTCGGGTATAAACCGACAACCGATTTGGAAACCGG 1435
Query 1431 GTTGAAGAAGTTCGTTAGATGGTATCTTTCTTATTACGGATACAATACTAAAGCCAAGCT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GTTGAAGAAGTTCGTTAGATGGTATCTTTCTTATTACGGATACAATACTAAAGCCAAGCT 1495
Query 1491 TGTACATTAACCATGACTATTATTATAATTATTTTTAATGAAATTAtttttttCTTTCTC 1550
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1496 TGTACATTAACCGTGACTATTATTAT--T-ATTTTTAATGAAATTATTTTTTTCTTTCTC 1552
Query 1551 CCATACATTTTATATGATTCGTT-CTTT-AGGATTAT-A-AAA-TCTAAATTATTCGTTT 1605
||||||||||||||||||||||| |||| |||||||| | ||| ||||||| ||||||||
Sbjct 1553 CCATACATTTTATATGATTCGTTTCTTTTAGGATTATTATAAAATCTAAATGATTCGTTT 1612
Query 1606 CTCTTAAGACAAGC 1619
||||||||||||||
Sbjct 1613 CTCTTAAGACAAGC 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5