BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491711
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30410.2 | Symbols: | sequence-specific DNA binding transcr... 1519 0.0
> AT4G30410.2 | Symbols: | sequence-specific DNA binding transcription
factors | chr4:14871109-14872176 REVERSE LENGTH=1068
Length=1068
Score = 1519 bits (822), Expect = 0.0
Identities = 1002/1081 (93%), Gaps = 44/1081 (4%)
Strand=Plus/Plus
Query 1 CCCTTACCTCTCTGTCTCTTTCCCTCTCTCTCGTTGAATTCACGAATTCGTGAGGTGACC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CCCTTACCTCTCTGTCTCTTTCCCTCTCTCTCGTCGAATTCACGAATTCGTGAGGTGACC 60
Query 61 GCAGATTTGTTCTTAGCAATCTCTGACGACACTAGAAGGAAA-AATTTCCTTAAAAAGGT 119
|||||||||||||||||||||| ||||||||||||||| ||| || || |||||||||||
Sbjct 61 GCAGATTTGTTCTTAGCAATCTTTGACGACACTAGAAGTAAACAAATT-CTTAAAAAGGT 119
Query 120 ATGTGTTCATGTCTCTTTTGGTTATGATAAGGAACCCTAAAC--GGAAAATAA-CCAGTT 176
||||||||||||||||| ||||||| |||||||||||||||| |||||| || ||||||
Sbjct 120 ATGTGTTCATGTCTCTTCTGGTTATAATAAGGAACCCTAAACGGGGAAAA-AATCCAGTT 178
Query 177 TGGTTATGA-TT--TG---A-T-GTATA-T---TACATGTATCCCTTTGATGTATAAAGG 224
||||||||| || || | | ||||| | ||||||||||||||||||||||||||
Sbjct 179 TGGTTATGATTTGATGTATATTAGTATATTACATACATGTATCCCTTTGATGTATAAAGA 238
Query 225 CATCATGG---------T---ATTAACTTACTTTTTCTTGAAGAGAATGATTCATAATTG 272
|||||||| | ||||||||||||||||||||| | ||||| |||||||||
Sbjct 239 CATCATGGTTTATTACTTAGGATTAACTTACTTTTTCTTGAA-A-AATGACTCATAATTG 296
Query 273 AGTATATTTCTACTTGATTAGGATTAATTAGGATGCAGCCTACGAGCTCAATGAATGAAG 332
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 297 AGTATATTTCTACTTGATTAGGA-T--TTAGGATGCAGCCTACGAGCTCAATGAATGAAG 353
Query 333 AATTCCTAAAGAAATGGCAAATGGGTCTTCAGATATTTCATCCTTCGATAGACAACACGA 392
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 354 AATTCCTAAAGAAATGGCAAATGGGTCTTCAAATATTCCGTCCTTCGATAGACAACACGA 413
Query 393 GTGTCCACGAGAGAAAGAAAGCAATAAAGCTCTCTGCAGACGTTGCAATGGCGTCTCTAA 452
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCGTCCACGAGAGAAAAAAAGCAATAAAGCTCTCTGCAGACGTTGCAATGGCGTCTCTAA 473
Query 453 GAAAAGGAACAACTTGTTGGAGCCGAGCCCTAATCGAGAAAACCGCCACCGAGGACAATT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAAAAGGAACAACTTGTTGGAGCCGAGCCCTAATCGAGAAAACCGCCACCGAGGACAATT 533
Query 513 TCCTCGTACGTCAGATGCTTTCCGGCATCAAAGCGGAAGCGCTAATCAACAAGAAGTTGC 572
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 534 TCCTCGTACGTCAGATGCTTTCCGGCATCAAAGCGGAAACGTTAATCAACAAGAAGTTGC 593
Query 573 CTAAGAGGACTGTGTGTCACAGAAAGATCGTGAGGCGAAGCAAGAAGATCTTGAGGAGGA 632
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 594 CTAAGAAGACTGTGTGTCATAGGAAGATCGTGAGGCGAAGCAAGAAGATCTTGAGGAGGA 653
Query 633 AATCGAAATCAGCGAGCGAAGAGGCGGCAGCAAAAGCTAAGAGACTCGTCAAGAGACGGA 692
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 654 AATCGAAATCAGCGAGCGAAGAGGCTGCAGCAAAAGCTAAGAGACTCGTCAAGAGACGGA 713
Query 693 CTCAAGGATTAAGAAACGTTGTCCCCGGTGGTGAATTGATGAGCAATGACGTCTTGTTGC 752
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 714 CTCAAGGATTAAGAAACGTTGTACCTGGTGGTGAGTTGATGAGCAATGACGTCTTGTTGC 773
Query 753 TACAAGAAACCTTAGATTACATTGTGTCGCTTCAAACGCAAGTAAATGTTATGAGAAGTA 812
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTCAAGAAACGTTAGATTACATTGTGTCGCTTCAAACGCAAGTAAATGTTATGAGAAGTA 833
Query 813 TTGTTGATGCTGCCGAGGCCGAAATTGAGAGGTAAATGATaaaaaaaaaaTCTTGTTTTG 872
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 834 TTGTTGATGCTGCCGAGGCCGAAATTGAGAGATAAATGATAAAAAAAAA-TCTTGTTTTA 892
Query 873 tttttttttttGTTTGCGGAGATTAATTGCGAAAGCATGATCTTGATCGGATCTCGTTGT 932
||||||| | || ||||||||| ||||||||||||||| | |||||||||| |||||
Sbjct 893 TTTTTTTATCTG----CGGAGATTAGTTGCGAAAGCATGATGTCGATCGGATCTTGTTGT 948
Query 933 TGTTCATTAGAACCGTATGTTATTTGGACAATGCAATTGTCATACGAGGATGGAGAGAT- 991
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 949 TGGTCATTAGAACCGTATGTTATTCGGACAATGCAATTGTCATACGAGGATGGAGAGATA 1008
Query 992 T-ATAGTAAGCCATTTTGTACATAAGGAATTTT-TCACAATGCTTATAGAAAGTTTCTGC 1049
| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1009 TTATAGTAAGCCATTTTGTACATAAGGAAATTTAT-ACAATGCTTATAGAAAGTTTCTGC 1067
Query 1050 T 1050
|
Sbjct 1068 T 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5