BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491714
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30390.1 | Symbols: | unknown protein; Has 22 Blast hits to... 784 0.0
> AT4G30390.1 | Symbols: | unknown protein; Has 22 Blast hits
to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14862009-14863185 REVERSE
LENGTH=782
Length=782
Score = 784 bits (424), Expect = 0.0
Identities = 572/637 (90%), Gaps = 35/637 (5%)
Strand=Plus/Plus
Query 18 GATCGTGGGAAATTCAGATTCCATAGCGACGAAAAAGAAGGCGGCGGATTCAAAAGAACA 77
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 138 GATCGTGGAAAATTCAGATTCCATTGCGACG-AAAAGAAGGCGGCGGATTC-AAAGAACA 195
Query 78 --C--ACA-AAATCAAAGACGGAGCC-TTTAAGCAATTTCG---T-TT-AA----T---- 118
| | | ||||| ||||||||||| ||| |||||||||| | || || |
Sbjct 196 CCCAAATACAAATCGAAGACGGAGCCTTTTCAGCAATTTCGTTTTATTCAACCTCTGGAA 255
Query 119 ------TCATCTCAAACTGATTGAATGAGAAACCCTCCTCCGTCTCTGCTCTCCCTCACC 172
||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 256 CACCAATCATCTCAAACTGATTGAATGAGAAGCCCTCCCCCGTCTCTGCTCTCCCTCACC 315
Query 173 GTCAACGCCGCCGTCTTAAACCTCTCTCGCATCAACGATCTCTCCCATCTACCTGATCAC 232
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 316 GTCAACGCCGCCGTCTTAAACATCTCTCGCATCAACGATCTCTCCCATCTTCCTGATCAC 375
Query 233 ATCCTCCTTGACCTCTTCGCGAGGACATTGAAAGCTGGGAAATTGAATGAGAGAGTTCTG 292
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 376 ATCGTCCTTGACCTCTTCGCGAGGACATTGGAAGCTGGGAAATTGAATGAGAGAGTTCTG 435
Query 293 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 495
Query 353 AAAATCAACGTTTATCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGAACGGG 412
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 496 AAAATCAACGTTTCCCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGCACGGG 555
Query 413 ACTAGGCGTTAGGTGAAAGGTGG-TAGATTATCGCGATGAGCGAGTTTGGAAA-TTCGGT 470
||||| || |||| |||||||| | ||||| ||||||||||||||||| ||| || |||
Sbjct 556 ACTAGACGATAGGCGAAAGGTGAAT-GATTA-CGCGATGAGCGAGTTTGAAAACTT-GGT 612
Query 471 CCTATGTGTTAAAAGGTCAGTTCATGATTGCAGTTTTCGGATCATTTAGGCAGAAACAAC 530
|||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||| |||
Sbjct 613 CCTATGTGTTTAAAGGTCAGTTCCTGATTGCAGTATTCGGATCATTTAGGTAGAAAAAAC 672
Query 531 AAATCTGGACAACTGCAGAGATACATTGCCTGATTGAAGTCTGTATTTTTCTTCTCTTTG 590
|| | || ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 673 AA-TGTGAACAACTGCAGAGATACATTACCAGATTGAAGTCTGTATTTTTCTTCTCTTTG 731
Query 591 TGTGTAAATATTAAATGAAGG-GGTTCAAATTATATA 626
||||||||||| ||| ||||| ||| |||||||||||
Sbjct 732 TGTGTAAATATGAAACGAAGGCGGT-CAAATTATATA 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30190722347
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5