BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491715
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30370.1 | Symbols: | RING/U-box superfamily protein | chr4... 870 0.0
> AT4G30370.1 | Symbols: | RING/U-box superfamily protein | chr4:14858490-14859503
REVERSE LENGTH=1014
Length=1014
Score = 870 bits (471), Expect = 0.0
Identities = 620/686 (90%), Gaps = 34/686 (5%)
Strand=Plus/Plus
Query 1 AAAAAGATGTCCGAATATTCCCGCATATAAATATCTATCAGAC--A-------G--C--- 46
||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 45 AAAAAGATGTCCGAATATTCCCGCATATAAATATCTATCAGACAAACTCTTTTGTACAAT 104
Query 47 ATACTTTGAATCC-ATTaaa---aaaaT-TTC--GAT-CTTTAAAATCTCTCCTTTATCT 98
||||||||||||| | |||| || ||| || | | |||||||||||||||| |
Sbjct 105 ATACTTTGAATCCGA-TAAATTTTCGATCTTCAAAATCCATAAAAATCTCTCCTTTATTT 163
Query 99 AGCCCGTGAAAACAG-G-ATTAGAGTTTGATTCGTATAAAAGAGAAGATTTTTAATCTCC 156
||||| | ||||||| | |||||||||||||||| |||||||||| |||||||||||||
Sbjct 164 AGCCC-T-AAAACAGAGTATTAGAGTTTGATTCG--TAAAAGAGAATATTTTTAATCTCC 219
Query 157 GCCGCCATCTTCCGATGTCGAT-ACATATTCCCTACGATGGCTCAAACTCCGGCGAGCCA 215
|||| || | |||||||||| || ||||||||||||||||||| |||| ||||||||
Sbjct 220 GCCG-CA-AGT-CGATGTCGATAAC-GATTCCCTACGATGGCTCAATCTCCCGCGAGCCA 275
Query 216 TCTCCGTCTCCTCCGCCACCAAAAGCGAACACGAATAATCTACCGACGAAGATTCTCTCT 275
|| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 276 TCACCGTCTCCACCGCCGCCAAAAGCGAACACGAAGAATCTACCGACGAAGATTCTCTCT 335
Query 276 AACTTCCTCATAGGTCTAATTATGATCCCTGTAGCTGTAACCGCCTTTCTCTTTATCCTC 335
|||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||
Sbjct 336 AACTTCCTCATAGGTCTAATCATGATCCCTGTAGCTATAACCGCTTTTATCTTTATCCTC 395
Query 336 ACGTCTCTCGGCTTCACCTTCTTCTTCGCTTTCTACTGGTTTCTTCAACGAAATTATCGC 395
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 396 ACGTCTCTCGGTTTCACCTTCTTCTTCGCTTTCTACTGGTTTCTTCAACGAAACTATCGC 455
Query 396 CACCGTCTCCGTCGTCATCGCCGTCACCAATACTCAGATGGGTTATCTCCAAGATGCGTG 455
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 456 CACCGTCTCCGCCGCCATCGCCGTCACGAATACTCAGATGGGTTATCTCCAAGATGCGTG 515
Query 456 AAGAGGCTTCCTCAATTCAAGTTTTGTGAGCCTAATACAGAGTACGGAAGCGATGATTGT 515
|||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct 516 AAGAGGCTTCCTCAATTCAAGTATTGTGAGCCTAGTTCAGAGTACGGAGGCGATGATTGT 575
Query 516 GTGGTTTGTATCGATGGATTCAGACAAGGACAGTGGTGTCGGAAGCTGCCTCGATGTGGA 575
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 576 GTTGTTTGTATCGATGGATTTAGACAAGGACAGTGGTGTCGGAAGCTGCCTCGATGTGGA 635
Query 576 CATGTGTTTCACCGAAAGTGTGTGGACTTGTGGTTGATTAAAGTCTCGACTTGTCCGATT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CATGTGTTTCACCGAAAGTGTGTGGACTTGTGGTTGATTAAAGTCTCGACTTGTCCGATT 695
Query 636 TGTAGGGATAGGGTTTATAGATTTGA 661
||||||||||||||||||||||||||
Sbjct 696 TGTAGGGATAGGGTTTATAGATTTGA 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5