BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491716
Length=2479
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30360.1 | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gat... 3834 0.0
> AT4G30360.1 | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated
channel 17 | chr4:14854811-14858003 REVERSE LENGTH=2636
Length=2636
Score = 3834 bits (2076), Expect = 0.0
Identities = 2359/2494 (95%), Gaps = 26/2494 (1%)
Strand=Plus/Plus
Query 1 AAACAAATATCCTTCCGAGTTCTGACTCGTCCCCGTGACTCAGTGGTTC-CCTCCTTCAA 59
|||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||| ||||
Sbjct 1 AAACAAATATCCCTCCGATTTCTGACTCGT-CCCGTGACTCAGTGATTCTCCT-CTTC-- 56
Query 60 TCAATCCTCTCCGGAGGAATTAAACAAAACCAACAATTTTTCTCAGATTTagagagagag 119
|||||||||||||| ||| ||||||||| | || || |||||||||||| ||||||||
Sbjct 57 -CAATCCTCTCCGGAAGAACTAAACAAAAAC-ACGATCTTTCTCAGATTT--AGAGAGAG 112
Query 120 taagagt--gagagtgtcagagaCGTGAATCAAAGAAATGATTTTTAAAAAC-T-TG-T- 173
||||||| ||||||||||||||| |||||||||||||||||||||||| | | || |
Sbjct 113 TAAGAGTGAGAGAGTGTCAGAGACACGAATCAAAGAAATGATTTTTAAAAGCTTCTGTTA 172
Query 174 GTTCGTAATTTTG-A-AGGttt-ttttttttA-CTCGAGCTTGAGCTTCTTCTAATGGAG 229
||| ||| |||| | || ||| ||| | | || ||||||||||||||||||||||||
Sbjct 173 ATTC-TAA-TTTGCATAGATTTGTTTACTCGAGCTTGAGCTTGAGCTTCTTCTAATGGAG 230
Query 230 TTAAGGAAGGACAAGCTTCTTATGTTTTATTCAGAGGGGAAAGAACGCAAAGAAGCTATC 289
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 231 TTAAGGAAGGACAAGCTTCTTATGTTTTACTCAGAGGGGAAAGAAAGCAAAGAAGCTAAA 290
Query 290 TGGGCAGTGAATGACCCAATGAGCAAATCTTATAAGCTCTCTTTACCTTCAGCACTAAGA 349
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGGGCAGTGAATGATCCAATGAGCAAATCTTATAAGCTCTCTTTACCTTCAGCACTAAGA 350
Query 350 CCTGATAATCTCTTACCTGGAAATAGACTTAGATACACTGATGCTTCTAAATCCAAATCT 409
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 351 CCTGATAATCTCTTACCTGGAAATAGACTTAGATACACTGATGCTTCTAAGTCCAAATCT 410
Query 410 TCCAAAGTCTCATGGTACAAGACAATTCTTGATCCAGGAAGTGAGATTGTCTTGAAATGG 469
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTAAAGTCTCATGGTACAAGACTATTCTTGATCCAGGAAGTGAGATTGTCTTGAAATGG 470
Query 470 AATTGGGTCTTCATTGTCTCGTGTATGGTTGCTCTTTTCATCGACCCGTTGTATTTCTTC 529
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 471 AATTGGGTCTTCATTGTCTCATGTATGGTTGCTCTCTTCATCGACCCGTTGTACTTCTTT 530
Query 530 GTGCCAGCTATAGGAGGAGATAAAAACTATCCATGTGCAAGGACTGATACGAGTTTAAGC 589
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 531 GTCCCAGCTATAGGAGGAGATAAAAACTATCCTTGTGCAAGGACTGATACAAGTTTAAGC 590
Query 590 ATTCTTGTTACGTTCTTCAGGACAATTGCGGATCTTTTCTACTTGCTGCACATTTTCATT 649
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 591 ATCCTTGTTACTTTCTTCAGGACAATAGCGGATCTTTTCTACTTGCTGCACATTTTCATT 650
Query 650 AAGTTTAGGACTGGTTTCATTGCGCCTAATTCAAGTACTAGAGTGTTTGGTAGAGGTGAG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAGTTTAGGACTGGTTTCATTGCGCCTAATTCAAGTACTAGAGTGTTTGGTAGAGGTGAG 710
Query 710 CTGGTGATGGATTCTAAGGCAATTGCTTGGAGGTATCTTAAATCTGACTTCATCATTGAT 769
|| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 711 CTTGTGATGGATCCTAAGGCTATTGCTTGGAGGTATATTAAATCTGACTTCATCATCGAT 770
Query 770 CTCATCGCGACGTTACCACTTCCGCAGATAGTTATCTGGTTTGTTATATCGTCCACAAAA 829
||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 771 CTCATTGCGACGTTACCACTTCCACAGATAGTTATCTGGTTTGTTATATCGACTACAAAA 830
Query 830 AGTTACCGGTTTGATCATAACAACAATGCTATTGCTTTGATTGTGCTCCTCCAATACACC 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 831 AGTTACCGGTTTGATCATAACAACAATGCTATTGCTTTGATTGTGCTCCTCCAATACATC 890
Query 890 CCAAGGTTCTATTTGATAATTCCGTTAAGTTCTCAAATCGTCAAAGCGACTGGAGTGGTT 949
||||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 891 CCAAGATTCTATTTGATAATTCCGTTAAGTTCTCAAATTGTTAAAGCAACTGGAGTTGTT 950
Query 950 ACAAAGACTGCGTGGGCTGGAGCTGCTTATAACCTTTTGCTATACATGCTAGCTAGTCAT 1009
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 951 ACAAAGACTGCTTGGGCTGGAGCTGCTTATAATCTTTTGCTATACATGCTGGCTAGTCAT 1010
Query 1010 GTACTTGGTGCTGCGTGGTATATATTATCGGTCGATAGATATACATCGTGCTGGAAATCA 1069
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 GTGCTTGGTGCAGCCTGGTATATATTATCGGTTGATAGATATACATCGTGCTGGAAATCA 1070
Query 1070 CGATGCGACAGAGAACG-TGGCCTAGTTAATTGTCAGCTATATTACTTAGACTGTGATTC 1128
||||| | | ||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGATGCAATGGTGAA-GCTGGCCAAGTTAATTGTCAGCTATATTACTTAGACTGTGATTC 1129
Query 1129 AATGTATGACGACAATCAGATGAATTGGGCAAATGTCACAAAAGTGTTTAAACTCTGTGA 1188
|||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 AATGTATGACAATAATCAGATGACTTGGGCAAATGTCACAAAAGTGTTTAAACTCTGTGA 1189
Query 1189 TGCACGGAATGGCGAGTTCAATTATGGGATATTCGGGAACGCAATCACGAAAAAAGTTGT 1248
||||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||
Sbjct 1190 TGCACGGAATGGCGAGTTCAAGTATGGGATCTTTGGGAATGCAATCACGAAAAACGTTGT 1249
Query 1249 GTCTTCAAACTTCTTCGAGAGATATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAG 1308
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GTCTTCACAGTTCTTCGAGAGATATTTCTACTGTTTGTGGTGGGGATTGCAGCAGCTTAG 1309
Query 1309 TTCTTATGGACAGAATTTGTCCACGACCATGTTCATGGGCGAAACCACATTTGCTGTTCT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTCTTATGGACAGAATTTGTCCACGACCATGTTCATGGGCGAAACCACATTTGCTGTTCT 1369
Query 1369 CATTGCAATCTTTGGTCTTGTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CATTGCAATCTTTGGTCTTGTCCTCTTTGCCCATCTCATTGGGAATATGCAGACATATCT 1429
Query 1429 GCAATCTTTGACTGTACGGCTTGAGGAATGGAGATTGAAGAAAAGAGACACTGAGGAGTG 1488
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1430 GCAATCTTTGACTGTACGGCTTGAGGAATGGAGATTGAAGAAGAGAGACACTGAGGAGTG 1489
Query 1489 GATGAGACATCGTCAACTTCCTGAAGAATTGAGAAACCGTGTGAGACGATATGAGCAGTA 1548
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1490 GATGAGACATCGTCAACTTCCTGAAGAGTTGAGAAACCGTGTGAGGCGATATGAGCAGTA 1549
Query 1549 TAAGTGGCTTGCAACAAGAGGAGTCGATGAAGAGGTTCTGCTGCAAAGTTTACCCACTGA 1608
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1550 TAAGTGGCTTGCAACAAGAGGAGTCGATGAAGAGGTTCTCCTGCAAAGTTTACCCACTGA 1609
Query 1609 TCTTCGCCGTGATATTCAACGTCACCTATGTTTAGATCTCGTTCGAAGAGTCCCATTTTT 1668
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1610 TCTTCGCCGTGATATTCAACGTCACCTATGTTTAGATCTTGTTCGAAGAGTCCCATTTTT 1669
Query 1669 CTCTCAAATGGATGATCAGTTACTCGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTG 1728
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1670 CTCTCAAATGGATGATCAGCTGCTTGATGCGATATGTGAGCGCCTGGTTTCTTCTCTGTG 1729
Query 1729 TACCGAAGGGACATACCTTGTACGTGAAGGTGACTTGATCTCAGAGATGCTCTTCATCAT 1788
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TACTGAAGGGACTTACCTTGTACGTGAAGGTGACTTGATCTCAGAGATGCTCTTCATCAT 1789
Query 1789 CAGAGGTAGACTCGAGAGTTCCACAACCAATGGAGGCCGAACCGGTTTCTTCAACTCGAT 1848
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1790 CAGAGGTAGACTCGAGAGTTCCACAACCAATGGAGGCAGAACCGGTTTCTTCAACTCGAT 1849
Query 1849 TATACTTAGACCTGGAGATTTCTGCGGGGAAGAACTTCTTTCTTGGGCTTTGCTTCCAAA 1908
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1850 TATACTTAGACCTGGAGATTTCTGTGGGGAAGAGCTTCTTTCTTGGGCTTTGCTTCCAAA 1909
Query 1909 ATCAACCTTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTAGAAGTCGAAGC 1968
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1910 ATCAACCTTGAATTTACCATCTTCTACAAGAACAGTTAGGGCTTTAGTTGAAGTCGAAGC 1969
Query 1969 ATTTGCTCTTCGAGCTGAAGATTTGAAGTTTGTTGCAAATCAGTTTAGGCGGTTACACAG 2028
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1970 ATTCGCTCTTCGAGCTGAAGATTTGAAATTTGTTGCAAATCAGTTTAGGCGGTTACACAG 2029
Query 2029 CAAGAAGCTTCAACATACTTTCAGATTCTACTCTCACCATTGGAGAACTTGGGCTGCTTG 2088
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CAAGAAGCTTCAACATACATTCAGATTCTACTCTCACCATTGGAGAACTTGGGCTGCTTG 2089
Query 2089 CTTCATACAAGCGGCTTGGCGCAGGTACAAGAGAAGAGTTATGGAGAATAACCTCACTGC 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 CTTCATACAAGCGGCTTGGCGCAGGTACAAGAGAAGAGTTATGGAGAATAACCTCACTGC 2149
Query 2149 GATTGAAACAATGGAAAATgaagaaggagaagtaggagaagaagtagaag-a--agaaga 2205
||||||| ||||||||||||||||||||||||||||||||||| ||| || | ||||||
Sbjct 2150 GATTGAATCAATGGAAAATGAAGAAGGAGAAGTAGGAGAAGAATTAGTAGTAGTAGAAGA 2209
Query 2206 agaagaGTGTGTTGAGGAGAGTCCTAGAACAAAGATGAACCTTGGAGTTATGGTTTTGGC 2265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 AGAAGAGTGTGTTGAGGAGAGTCCTAGAACAAAGATGAACCTTGGAGTTATGGTTTTGGC 2269
Query 2266 ATCGCGTTTTGCAGCTAATACAAGACGCGGTGTTGCAGCTCAGAGAGTTAAGGATGTCGA 2325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2270 ATCGCGTTTTGCAGCTAATACAAGACGCGGTGTTGCAGCTCAGAGAGTTAAGGATGTAGA 2329
Query 2326 ATTGCCTCGGTTTAAGAAACCAGAAGAGCCTGATTTCTCTGCTGAGCATGATGATTGACT 2385
||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2330 ATTACCCCGGTTTAAGAAACCCGAGGAGCCTGATTTCTCTGCTGAGCATGATGATTGACT 2389
Query 2386 GATTTATAACCAGGAAAAGAAGCTGACTTTATTTCACAGGAGATTTTTATGACAAGAACA 2445
||| ||||||||||| |||||||||||||| || || || |||| || ||||||||||||
Sbjct 2390 GATGTATAACCAGGAGAAGAAGCTGACTTTGTTCCATAGAAGATCTTAATGACAAGAACA 2449
Query 2446 CTACAGATTAAGTTTCCTGGTCCTTTGGGAGACA 2479
||||||| ||||||||||| ||||||||||||||
Sbjct 2450 CTACAGAGTAAGTTTCCTGTTCCTTTGGGAGACA 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123009344236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5