BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491719

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30320.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   597    2e-170


> AT4G30320.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr4:14835833-14836318 FORWARD LENGTH=486
Length=486

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 371/395 (94%), Gaps = 0/395 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCCACAAAACGCAGCAAGAGCTCGTTTAAGGCTCAAACCGCTAAAATGGGACGCC  60
            |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  91   ATGGGTCCACAAAACGCAGCAAGAGCTCATTTAAGGCTCAAACCGCTAAAGTGGGACGCC  150

Query  61   AAATTGGCCCGTTATGCGCAATGGTGGGCTAACCAGAGACGCCGTGACTGCGCCTTGATC  120
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  151  AAATTGGCCCGTTACGCGCAATGGTGGGCTAACCAGAGACGCGGTGACTGCGCCTTGACC  210

Query  121  CATTCCAATGGACCCTATGGTGAGAATCTCTTTTGGGGCTCAGGAAATAGATGGAGTCCA  180
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  211  CATTCCAATGGACCCTATGGTGAGAATCTCTTTTGGGGCTCAGGCAATAGATGGGGTCCA  270

Query  181  GCCCAAGCCGCCTATGGATGGTTGTCCGAAGCAAGGAGCTATAACTATAGATCCAACTCG  240
             | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  271  TCTCAAGCCGCCTATGGATGGTTGTCTGAAGCAAGGAGCTATAACTATAGATCTAACTCG  330

Query  241  TGCAACTCCGAGATGTGTGGCCATTACACACAAATCGTGTGGaaaaaaaCACAGAAGATT  300
            |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct  331  TGCAACTCCGAGATGTGTGGCCATTACACACAAATCGTGTGGAAGAACACACAAAAGATT  390

Query  301  GGCTGTGCTCACGTGATCTGCAATGGCGGAGGAGGCGTGTTCTTGACTTGCAATTACGAT  360
            || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  391  GGTTGCGCTCACGTGATCTGCAATGGCGGAGGAGGCGTATTCTTGACTTGCAATTATGAT  450

Query  361  CCGCCGGGAAATTTTCTTGGTACTAAGCCGTATTG  395
            || ||||| |||||||||||||  ||||| |||||
Sbjct  451  CCACCGGGGAATTTTCTTGGTAGGAAGCCTTATTG  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18649334879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5