BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491720
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30310.2 | Symbols: | FGGY family of carbohydrate kinase | ... 3031 0.0
> AT4G30310.2 | Symbols: | FGGY family of carbohydrate kinase
| chr4:14831861-14835214 FORWARD LENGTH=1914
Length=1914
Score = 3031 bits (1641), Expect = 0.0
Identities = 1768/1830 (97%), Gaps = 5/1830 (0%)
Strand=Plus/Plus
Query 1 TCACCTCCGTAGCTTTCGCCGTCGCCGTTCAGATGACCACCGCTGAGTTAAATCCATTTC 60
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 21 TCACCTCCGTAGCTTCCGCCGTTGCCGTTCAGATGACCACCGCTGAGTTAAATCCATTTC 80
Query 61 CGTCTCGCTCCGTTTTTCTCGGTGTCGACGTTGGCACTGGAAGCGCCCGTGCCGGTTTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGTCTCGCTCCGTTTTTCTCGGTGTCGACGTTGGCACTGGAAGCGCCCGTGCCGGTTTGT 140
Query 121 TCGATGAAAATGGGAAACTTCTAGGATCTGCTAGTAGCCCGATACAGATTTGGAAGGATG 180
||||||| |||||||| |||||||||||||||| ||| || |||||||||||||||||||
Sbjct 141 TCGATGATAATGGGAAGCTTCTAGGATCTGCTACTAGTCCAATACAGATTTGGAAGGATG 200
Query 181 GGGACTGTGTTGAGCAATCTTCAACCGATATTTGGCATGCAGTTTGTGCTGCTGTGAAAT 240
| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 201 GAGACTGTATTGAGCAATCTTCAACAGATATTTGGCATGCAGTTTGTGCTGCTGTGAAAT 260
Query 241 CTGCTTGCTCTCTTGCAAATGTTTCGGAAGTAGAAGTGAAAGGAATTGGCTTTGCTGCCA 300
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 261 CTGCTTGCTCTCTTGCAAATGTTTCGGATGTGGAAGTGAAAGGAATAGGCTTTGCTGCCA 320
Query 301 CGTGCTCTCTCGTGGCGGTCGATGCTGAGGGATCCCCTGTTACAGTGTCTTGGAGTGGTG 360
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 321 CGTGCTCTCTCGTGGCGGTTGATGCTGAGGGATCTCCTGTTACAGTGTCGTGGAGTGGTG 380
Query 361 ATTCAAGAAGAAACATTATTGTATGGATGGACCATAGAGCTGTAAAGCAGGCAGAGAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATTCAAGAAGAAACATTATTGTATGGATGGACCATAGAGCTGTAAAGCAGGCAGAGAGAA 440
Query 421 TCAACTCATTTAATTCTCCAGTCTTGCAATACTGTGGTGGCGGTGTTTCTCCAGAAATGG 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 441 TCAACTCATTTAATTCTCCAGTCTTGCAGTACTGTGGTGGCGGTGTTTCTCCAGAAATGG 500
Query 481 AGCCACCAAAACTTCTATGGGTGAAAGAAAATCTTAAGGAGTCTTGGTCCATGGTGTATA 540
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 501 AGCCACCAAAACTTTTATGGGTGAAAGAAAATCTTAAGGAGTCTTGGTCAATGGTGTATA 560
Query 541 AGTGGATGGACTTGAGTGACTGGCTGTCCTACAGAGCTACTGGAGATGATACACGTAGTT 600
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 561 AGTGGATGGACTTGAGTGATTGGCTATCCTACAGAGCTACTGGAGATGATACACGTAGTT 620
Query 601 TGTGCACCACAGTATGTAAGTGGACTTATCTTGGCCATGCACACATGCACCAGATGAGTG 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 621 TGTGCACCACAGTATGTAAATGGACTTATCTTGGCCATGCACACATGCACCAGATGACTG 680
Query 661 AGAAGGCTTCTCGTGATATGGAAGCGTGTGGATGGGATGATGAGTTCTGGGAAGAAATTG 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 681 AGAAGGCTTCTCGTGATATGGAAGCTTGTGGATGGGATGATGAGTTCTGGGAAGAAATTG 740
Query 721 GCTTAGGCGATTTGGTAGATGGGCACCATGCCAAGATCGGACGAAGTGTGGCTTTTCCTG 780
| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 741 GTTTAGGCGATTTGGTAGATGGGCACCATGCTAAGATTGGACGAAGTGTAGCTTTTCCTG 800
Query 781 GACATCCACTGGGTAATGGTCTAACTGCAACCGCTGCTAAGGAACTGGGTCTGTTGGCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 801 GACATCCACTGGGTAATGGTCTAACTGCAACCGCTGCTAAGGAACTGGGTCTGTTAGCTG 860
Query 841 GAACTCCTGTTGGGACTTCACTCATTGATGCTCATGCCGGTGGTGTTGGTGTCATGGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 861 GAACTCCTGTTGGGACTTCACTCATTGATGCTCATGCCGGTGGTGTTGGGGTCATGGAAA 920
Query 901 GTAAATCAGATTCAGACTCCTTGACGAAAGAGTCAGATGTGGATACCTTGTGCTCTCGAA 960
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GTAAATTAGAATCAGACTCCTTGACGAAAGAGTCAGATGTGGATACCTTGTGCTCTCGAA 980
Query 961 TGGTCTTGGTATGTGGCACATCAACTTGTCATATGGCTGTTTCCCGTGAAAAGCTGTTTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGGTCTTGGTATGTGGCACATCAACTTGTCATATGGCTGTTTCCCGTGAAAAGCTGTTTA 1040
Query 1021 TTCCTGGCGTGTGGGGGCCTTTTTGGTCAGCAATGGTTCCGGAGTATTGGCTTACAGAAG 1080
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1041 TTCCTGGCGTGTGGGGGCCTTTTTGGTCAGCTATGGTTCCGGAGTATTGGCTTACAGAAG 1100
Query 1081 GAGGACAAAGTGCTACTGGAGCTTTACTTGATCACATCATCGAAAATCATGTCGCTTCTC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1101 GAGGACAAAGTGCTACTGGAGCTTTACTTGATCACATCATCGAAAATCATGTTGCTTCTC 1160
Query 1141 CCCGTCTTGCAAATCGTGCTGCTTCCCAGAAAGTTTCTGTGTTTGAACTCCTGAACAACA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1161 CCCGTCTTGCAAATCGTGCTGCTTCCCAGAAAGTTTCTGTGTTTGAACTCCTAAACAACA 1220
Query 1201 TTTTGAAAACGATGGCTGAAGATACGAGTTCTCCATTTATATCTGCCCTTACCTCAGACA 1260
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1221 TTTTGAAAACGATGGCTGAAGATACAAGTTCTCCATTTATATCTGCCCTTACCTCAGACA 1280
Query 1261 TGCATATCCTTCCTGACTTTCATGGAAACAGATCTCCCGTTGCTGACCCAAATTCGAAAG 1320
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1281 TGCATATCCTTCCCGACTTTCACGGAAACAGATCTCCCGTTGCAGACCCAAATTCGAAAG 1340
Query 1321 GAGTGATATTCGGAATGTCTCTTGACACATCCGAGAAGCAGTTGGCTCTTCTATACCTCG 1380
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1341 GAGTGATATTCGGAATGTCTCTTGACACGTCCGAGAAGCAGTTGGCTCTTCTATACCTCG 1400
Query 1381 CCACAATCCAGGGAATCGCATATGGTACACGTCATATCGTAGAGCATTGCAATGCTCATG 1440
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1401 CCACAATTCAGGGAATCGCATATGGTACACGTCATATCGTAGAGCATTGCAATACTCATG 1460
Query 1441 GTCACAAAATTGATACACTGCTTGCTTGTGGCGGCCTTTCAAAGAACCCATTGTTCATCC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GTCACAAAATTGATACACTGCTTGCTTGTGGCGGCCTTTCAAAGAACCCATTGTTCATCC 1520
Query 1501 AGGAACATGCTGATATAGTTGGTTGTCCGATTATTCTTCCCCGAGAAAGCGAGTCTGTTC 1560
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1521 AAGAACATGCTGATATAGTCGGTTGTCCGATTATTCTTCCTCGAGAAAGCGAGTCTGTTC 1580
Query 1561 TCTTAGGAGCAGCAATTCTTGGAGCAGTTGCTGGCAAGAACTATCCGAGTCTCCATGATG 1620
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1581 TCTTAGGAGCAGCAATTCTTGGAGCAGTTGCTGGCAAGAACTACCCTAGTCTCCATGATG 1640
Query 1621 CCATGAAAGCTCTTAACGCAGCTGGACAAGTGGTTGTCCATCCATCATCAGACCCTAAGG 1680
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 1641 CCATGAAAGCTCTTAACGCAGCTGGACAAGTGGTT--C-ATCCCTCATCAGACCCTAAGA 1697
Query 1681 TTACGAAGTATCACGATGCCAAA-TACCGTATTTTCCGTAACCTCTACGAACAGCAATTG 1739
| | ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1698 TCAAGAAGTATCACGATGC-AAAGTACCGTATTTTCCGCAACCTCTACGAACAGCAATTG 1756
Query 1740 TCTCACCGTTCCATCATCGCCGAAGCTCTTGCATAATGTTTCTGATCAACAAAAACTGTA 1799
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1757 TCTCACCGTTCCATCATCGCTGAAGCTCTTGCATAATGTTTCTGATCAACAAAAACTGTA 1816
Query 1800 TAGTTCTCAGCATCATTCACCTTTCTTTTT 1829
|||||||| ||| |||| ||||| ||||||
Sbjct 1817 TAGTTCTCTGCAACATTTACCTTCCTTTTT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92168200620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5