BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491725
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30260.1 | Symbols: | Integral membrane Yip1 family protein... 1709 0.0
AT2G18840.1 | Symbols: | Integral membrane Yip1 family protein... 697 0.0
> AT4G30260.1 | Symbols: | Integral membrane Yip1 family protein
| chr4:14816622-14818854 REVERSE LENGTH=1243
Length=1243
Score = 1709 bits (925), Expect = 0.0
Identities = 1152/1253 (92%), Gaps = 50/1253 (4%)
Strand=Plus/Plus
Query 1 TCTTCTTCATCAGATCTGAATC-TAATTTCGCCCAAATCAAAGCTTTTGACCTAAAT-CG 58
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 7 TCTTCTTCGTCAGATCTGAATCTTAATTTCCCCCAAATCAAAGCTTTTGACCTAAATCCG 66
Query 59 TTTCCCGGG---AA-AAATCAACAAACCATCACCGGAATCTCCAATTTCTCTCCGGTGAA 114
||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 67 TTTCCCGGGAAAAATAAATCAACAAACCATCACCGGAATCTTCAATATCTCTCCGGTGAA 126
Query 115 G-AAAAATGTCGCACAACGATACGATTCCGCTTTATCAATCATCTCAATCAGACATCGAC 173
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 GAAAAAATGTCGCACAACGATACGATTCCGCTTTATCAATCATCTCAATCAGACATTGAC 186
Query 174 GAGATTGAGAATATGATGAACGATAGTTTCCAATCAGGTCCCGGAACCGTTCTTCCAGCT 233
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 187 GAGATTGAGAATATGATGAACGACAGTTTTCAATCAGGTCCCGGAACCGTGCTTCCTGCT 246
Query 234 CGACCACCGAGTCCGATCCGTCCGTCAATTCCCGTTTCATCCTCACCGTTCGTTCAATCC 293
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 247 CGACCACCGAGTCCGATCCGTCCGTCGATTCCCGTTTCATCCTCACCGTTCGTTCAATCC 306
Query 294 AATCTCCCACCGCTACCACCGTCGTCTT-CT--TCCTCTCAGAAGGTGATGCCTGTTCCA 350
|||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 307 AATCTCCCACCGCTTCCACCGTCGTCTTCCTCCTCCACTCAGAAGGTGATGCCTGTTCCA 366
Query 351 GCTCCTCCACCGCTCCCGTCGGTAGGTAACTCCAACAGCTCCGATGGTAACAAGAGCATT 410
||||||||||| || ||||| | ||| | | | ||| ||||||||||| |||
Sbjct 367 GCTCCTCCACCACTTCCGTCAGCAGG----T---A-A----CGAAGGTAACAAGAGTATT 414
Query 411 GGAGGGAGTGGATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTATGGGATACTGTG 470
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GGAGGTAGCGGATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTTTGGGATACTGTG 474
Query 471 AAGCGCGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCGAATCCGTAT 530
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 475 AAGCGTGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTAT 534
Query 531 AGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCGTTTTTCTTCATT 590
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 AGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCTTTTTTCTTCATT 594
Query 591 GTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCTGTTAAGAAGTCTGAAGTATTTGCC 650
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 GTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCCGTTAAGAAGTCTGAAGTATTTGCC 654
Query 651 GTGGCATTTGCACTACTTGCAGCTGGGGCAGTTATCCTCACACTAAATGTGCTGCTTCTG 710
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GTGGCATTTGCACTACTTGCAGCTGGGGCAGTGATCCTCACACTAAATGTGCTGCTTCTG 714
Query 711 GGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGTTACTGTCTATTTCCACTG 770
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 715 GGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGCTACTGTCTATTTCCGCTA 774
Query 771 GACGTTGGAGCAGTGATCTGCATGTTGAAGGACAATGTGATACTCAAAATGATCGTTGTG 830
||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||
Sbjct 775 GACGTTGGAGCAGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGGTCGTTGTG 834
Query 831 TCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGTGCTGCAGTGAAC 890
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 835 TCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGCGCCGCAGTGAAC 894
Query 891 CCGAGAAGAAAAGCTCTAGCACTTTACCCGGTTTTCCTCATGTATGTCTCTGTTGGCTTC 950
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 895 CCGAGAAGAAAAGCTCTCGCACTCTACCCGGTCTTCCTCATGTATGTCTCTGTTGGCTTC 954
Query 951 TTGATCATTGCCATTGATTGATTCTATCTGGAAAAATGGGAAATCAGAGATAGTTTCTCT 1010
|| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 955 TTAATCATTGCCATTAATTGATTCTATCCGGAAAAATGGGAAATCAGAGATAGGTTCTTT 1014
Query 1011 GATTCAGTTTGGGAAATCATTTGGTACAGAGTAGATAGAGAATTCTCCAGCCGTGAACTA 1070
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 GATTCAGTTTGGGAAGTCATTTGGTACAGAGTAGATAGAGAATTCTCCAGCCGCGAACTA 1074
Query 1071 TTCTGAGTTCTAA--AGATCATATGTATAATATGTTCTTCGACGCTTTTTTGTTAAACTC 1128
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1075 TTCTGAGTTCTAATGAGATCATATGTATAATATGTTCTTTGACGCTTTTTTGTTAAACTC 1134
Query 1129 ---TATGG-TTTTGCT-TT--AT--G-T---G-T------ATGAAACTTACGGTTCTTTT 1168
| ||| |||| || || || | | | | ||||||||||||||||||||
Sbjct 1135 CCCTGTGGATTTTACTCTTCTATATGGTTTTGCTTTGTGTATGAAACTTACGGTTCTTTT 1194
Query 1169 T-GGAAACGTATACAGTATATAATATTAAAACCTTGATGATCGTAGCTTTAAT 1220
| ||||||||||| |||| | ||| || ||||||||| |||||||||||||
Sbjct 1195 TTGGAAACGTATA---TATA-A-TATCAAGACCTTGATGCTCGTAGCTTTAAT 1242
> AT2G18840.1 | Symbols: | Integral membrane Yip1 family protein
| chr2:8158198-8160091 FORWARD LENGTH=1179
Length=1179
Score = 697 bits (377), Expect = 0.0
Identities = 720/879 (82%), Gaps = 49/879 (6%)
Strand=Plus/Plus
Query 115 GAAA-AATGTCGCACAA--CGATACGA-TTCCGCTTTATCAATCATCTCAATCAGACATC 170
|||| ||||| ||||| |||||| | | |||||| ||| ||| ||||||||||||||
Sbjct 85 GAAACAATGT--CACAAGGCGATAC-AGTACCGCTTCATCCATCGTCTCAATCAGACATT 141
Query 171 GACGAGATTGAGAATATGATGAACGATAGTTTCCAATCAGGTCCCGGAACCGTTCTTC-C 229
|||||||| |||||| |||| ||||| || |||||||||||||||||||||||| || |
Sbjct 142 GACGAGATCGAGAATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTC-TCGC 200
Query 230 AGCTCGACCACCGAGTCCGATCC-GTCCGTCAATTCCCG--T-TTCATC--C-TCACCGT 282
||||| |||||||| || | || | || || ||||| | | ||| || | || | |
Sbjct 201 CGCTCGTCCACCGAG-CCCAACCAGACCTTCGATTCCAGTATCTTCTTCTTCTTCTTCTT 259
Query 283 -T-CG--T-T-CAATCCAATCTCCCACCGCTACCA-CCGTCGTCTTCTTCCTCTCAGAAG 335
| || | | ||||| ||||| |||||||| || |||||| || || |||||||
Sbjct 260 CTCCGTTTATGCAATCGAATCTTCCACCGCT-TCATCCGTCG---TCATCAGCTCAGAAA 315
Query 336 GTGATGCCTGTTCCAGCTCCTCCACCGCTCCCGTCGGTAGGTAACTCCAACAGCTCCGAT 395
|||| | ||| || | |||||| || || ||| ||||| |||||| | ||| | ||
Sbjct 316 GTGACACATGTCCCCGTTCCTCCGCCTCTTCCGGCGGTAAGTAACT-C--CAG---CAAT 369
Query 396 GGTAACAAGAGCATTGGAGGGAGTGGATTCGGATCTCCGCCAAATACATTGACGGAGCCT 455
| | || |||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct 370 --T-TC-----CA-AGGAGCGAGTGCTTTTGGATCTCCGCCTAATACGTTGACGGAGCCT 420
Query 456 GTATGGGATACTGTGAAGCGCGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTG 515
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GTGTGGGATACTGTGAAGCGAGATCTGTCTCGGATCGTGAGTAATTTGAAGCTTGTGGTG 480
Query 516 TTTCCGAATCCGTATAGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGA 575
||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 481 TTTCCTAATCCGTATAGGGAAGATCCTGGGAAGGCTCTTAGAGATTGGGATCTTTGGGGT 540
Query 576 CCGTTTTTCTTCATTGTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCTGTTAAGAAG 635
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||
Sbjct 541 CCGTTTTTCTTCATTGTGTTCTTGGGTCTTACTCTTTCATGGTCAGCTTCCGTCAAGAAG 600
Query 636 TCTGAAGTATTTGCCGTGGCATTTGCACTACTT-GCAGCTGGGGCAGTTATCCTCACACT 694
|| || |||||||| ||||||||||||||| || ||||| ||||| || ||||| |||||
Sbjct 601 TCCGAGGTATTTGCAGTGGCATTTGCACTA-TTAGCAGCCGGGGCGGTGATCCTTACACT 659
Query 695 AAATGTGCTGCTTCTGGGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGTTA 754
||| ||||| || ||||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 660 AAACGTGCTTCTCCTGGGTGGACATATAATCTTCTTCCAAAGCTTGAGCCTTCTAGGTTA 719
Query 755 CTGTCTATTTCCACTGGACGTTGGAGCAGTGATCTGCATGTTGAAGGACAATGTGATACT 814
|||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 720 CTGTTTATTTCCGCTAGACGTTGGAGCCGTGATCTGCATGTTGAAAGACAATGTGATACT 779
Query 815 CAAAATGATCGTTGTGTCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCAT 874
|| ||| | ||||||||||| || |||||||||||||| ||||||||||| ||||| ||
Sbjct 780 GAAGATGGTGGTTGTGTCTGTAACCCTTGCCTGGAGCTCATGGGCTGCTTACCCTTTTAT 839
Query 875 GAG-TGCTGCAGTGAACCCGAGAAGAAAAGCTCTAGCACTTTACCCGGTTTTCCTCATGT 933
||| | | || || ||||| ||||||||||| || || || ||||| || ||||||||||
Sbjct 840 GAGCT-CAGCGGTTAACCCAAGAAGAAAAGCACTCGCTCTATACCCCGTCTTCCTCATGT 898
Query 934 ATGTCTCTGTTGGCTT-CTTGATCATTGCCATTGATTGA 971
|||| || || || || || ||||| ||||| |||||
Sbjct 899 ATGTGTCAGTCGGTTTTCTC-ATCATAGCCATCAATTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5