BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491727
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 1857 0.0
AT2G18860.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 291 2e-77
> AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr4:14807919-14809985
REVERSE LENGTH=1497
Length=1497
Score = 1857 bits (1005), Expect = 0.0
Identities = 1340/1487 (90%), Gaps = 81/1487 (5%)
Strand=Plus/Plus
Query 1 aaaaataaaaacggaaagct---ggaag-aaaaataaaaattccttctttccttctgaa- 55
|||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 38 AAAAATAAAAACAGAAAGCTGGAGGAAGAAAAAATAAAAATTCCTTCTTTCCTCCTGAAG 97
Query 56 gcaaaaaagg-a-agaagagaagaGCAGAGAAGGAAGTAGAATCTAA-TTTGGATTTTAA 112
|||||||||| | |||||||||||| ||||||||||| ||||||||| |||||||| |||
Sbjct 98 GCAAAAAAGGAAGAGAAGAGAAGAGAAGAGAAGGAAGCAGAATCTAATTTTGGATTATAA 157
Query 113 TCGGAGAGAGAATCTATTCCGACGAat-tttttgggttgatttggatttttgtcgatttt 171
||||||||||||||||||||||||||| |||| ||||||| | |||||| | |
Sbjct 158 TCGGAGAGAGAATCTATTCCGACGAATCTTTTCGGGTTGA--T---TTTTTG--G----T 206
Query 172 cgtttagtcttaatttgaggggttttgGTGTGGTTTCGAAGATGATGGTAGCTAATAGCT 231
| | ||||||||| |||||| |||||||||||||||||||||||||| ||||| |
Sbjct 207 C------T-TTAATTTGAAGGGTTTAGGTGTGGTTTCGAAGATGATGGTAGCGAATAGTT 259
Query 232 TCGATCTATGGCAAAAAGATGtttttttCTCTGCAGCTGAGGAGGTTCAAGAATCTGCTG 291
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCGATCTATGGCAAAAGGATGTTTTTTTCTCTGCAGCTGAGGAGGTTCAAGAATCTGCTG 319
Query 292 ATATAATGGAATCTGCGTATAGGTTGTGGTTTAAACAGAAGAGAGACGGTCGAGTAACCG 351
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 320 ATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAGAGAAGAGAGACGGTCGAGTATCCG 379
Query 352 TCGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTTGAGCACTGCTAAATGGCAGT 411
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TAGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTTGAGCACTGCTAAATGGCAGT 439
Query 412 TGGAAGAGTTTGAGAGGGCAGTGAGGTTGAGCCATGGAAATTGTCGAGATGACACTACCT 471
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 440 TGGAAGAGTTTGAGAGGGCAGTGAGCTTAAGCCATGGAAATTGTCGAGATGACACTACCT 499
Query 472 TAACTAGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTTATCGAGTAGAGTCTT 531
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 500 TAACTAGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTTATCAAGTGGAATCTA 559
Query 532 CTCTGCAAGAGGCGTTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACA 591
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTCTGCTAGAGTCGTTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACA 619
Query 592 AAGAAGAGCGTGATGACCTTGCCATGTTTCTATCTGGATCTTCTCAGACATCAGAGAGTT 651
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 620 AAGAAGAGCGTGATGATCTCGCCATGTTTCTATCTGGATCTTCTCAGACGTCAGAGAGTT 679
Query 652 TAAACAGTGATAGCATTAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGATTCCAC 711
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 680 TAAACAGTGATAGCATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGAATCCAC 739
Query 712 GTGGGATGAATGGCAGACGAGAGACTAGATGTTATGGTGATAGTCCTGACTGTGTGATAG 771
||||||| ||||||||| ||||| |||||||||||| || |||||||| ||||||||||
Sbjct 740 GTGGGATCAATGGCAGAAGAGAGGGTAGATGTTATGGCGACAGTCCTGATTGTGTGATAG 799
Query 772 ACATTGACGAGAGAGGAAGTCCTGAAAGTGGTGATGCTATGATCCGCGTTCAAGATGATA 831
|||||||||| | ||||||||| ||||||| | | ||| || | | |
Sbjct 800 ACATTGACGACATAGGAAGTCCGGAAAGTG------C-A-GAT--------AA-A--A-A 839
Query 832 AAAAAGCCGGTACAAGAAGAACATGGAGTTCACCAAATGTACCGAATATCAGTGCGTTGA 891
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 AG---GC-GGTACAAGAAGAACATGGAGTTCACCAAATGTACCAAATATCAGTGCGTTGA 895
Query 892 GGATTAATGTTCCTTTTAATGCAAaagaagaagagagagagaagTTCCTGTCACAAATCG 951
|||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 896 GGATTAATGTCCCTGTTAATGCAAAAGAAGAAGAGAGGGAGAAGTTCCTATCACATATTG 955
Query 952 AAGACACTCCTAAAGAAAAAGGATCTAAACCTCTGTTTTGGCTGCAGAGATGTCGTGATT 1011
|||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 956 AAGACACTCCTAAAGAGAAAGGAGCTAAACCTATGTTTTGGCTGCAGAGATGTCGTGATT 1015
Query 1012 ATAACCAGCTCTTTGACAGAGTCAAGGTTTATCAAAGACGATTTCGTGTTCCATTGACCC 1071
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1016 ATAACCAGCTCTTTGACAGAGTCAAGGTTTATCAAAGACGATTTCGCGTTCCATTGAGCC 1075
Query 1072 GCCCGATTAAGCTCATTCTTTCCTTAACGCTGATCTTGTTTCTTCTATTATTCATCTTGA 1131
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1076 GCCCTATTAAGCTCATTCTTTCCTTAACGCTAATCTTGATTCTTCTATTATTCATCTTGA 1135
Query 1132 GAACTTAAA-CCGCGGTTTCAGAAACTCTCAAGAAACATTGACAGGTGTTTTCACAGATT 1190
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1136 GAACTTAAAACCGCGGTTTCAGAAACTCTCAAGAAACATTGACAGGTTTTTTCACAGATT 1195
Query 1191 CTTG--T---G--T-A-A---T-G---G--G--ACATGATTCAACATCCTTAGAG--AAG 1228
|||| | | | | | | | | | |||||||||||||||||| ||| |||
Sbjct 1196 CTTGCGTATTGGGTTACACACTCGTTAGATGCTACATGATTCAACATCCTTCGAGGGAAG 1255
Query 1229 GAAGAGAGATTAGAAG-CTTTGTCAAGATTCAAAAGAAGGACAAA-CTCTGCTTTATTAC 1286
|| ||||||||| ||| ||||||||||||||||| |||||||||| | ||| ||||||||
Sbjct 1256 GAGGAGAGATTAAAAGACTTTGTCAAGATTCAAATGAAGGACAAAGC-CTGATTTATTAC 1314
Query 1287 TCTCTCTTA-TCCTTAGGGAACATATAGGAACTTGTATATTTGTAAGATCAATATGTAAA 1345
||||||||| |||| ||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 1315 TCTCTCTTAATCCTCAGGGAACATATAGGAACCTGTAAATTTGTAAGATCAATTTGTAAA 1374
Query 1346 ACTTGAAGCTACG---TTTCGTAAAACGTTAGACGTGTACCTAAAGGAAACCAATGCGTG 1402
||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1375 ACTTGAAGCTACGACGTTTCGTTAAACTTTAGACGTGTACCTAAAGGAAACCAATGCGTG 1434
Query 1403 TTTGTGTTCAATGATATCTCCAGTGTTTGTTTGTCTCTCAGATATTT 1449
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTTGTGCTCAATGATATCTCCAGTGTTTGTTTGTCTCTCAGATATTT 1481
> AT2G18860.1 | Symbols: | Syntaxin/t-SNARE family protein | chr2:8164241-8165974
FORWARD LENGTH=1332
Length=1332
Score = 291 bits (157), Expect = 2e-77
Identities = 364/456 (80%), Gaps = 45/456 (10%)
Strand=Plus/Plus
Query 209 GAAGATGATGGTAGCT-AATAGCTTCGATCTATGGCAAAAAGATGtttttttCTCTGCAG 267
|||||||||||||| | || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 114 GAAGATGATGGTAG-TGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAG 172
Query 268 CTGAGGAGGTTCAAGAATCTGCTGATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAC 327
|||| ||||||||| ||||| | ||||||||||| ||||| ||||| |||||| ||
Sbjct 173 CTGAAGAGGTTCAAAAATCTACAGATATAATGGAGTCTGCTTATAGATTGTGGATT---- 228
Query 328 AGAAGAGAGACGGTCGAGTAACCGTCGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTG 387
|| ||||| | || || | || || || | || || ||||| ||||| |
Sbjct 229 AG-AGAGA-A-----GA--AA-----G-AT--GA-GA--TTTGTAAGGAACTTCAAGCAG 268
Query 388 CTTTGA-GCACTGCTAAATGGCAGTTGGAAGAGTTTGAGAGGGCAGTGAGGTTGAGCCAT 446
|||| | | || ||||||||||||||||| |||||||||| ||||||||| ||||| |||
Sbjct 269 CTTT-AGGTACAGCTAAATGGCAGTTGGAGGAGTTTGAGAAGGCAGTGAGATTGAGTCAT 327
Query 447 GGAAA---T-TGTCGA-GATGACACTACCTTAACTA-GGCATAAACAGTTTGTTACCGCT 500
||| | || || |||| || | | || | |||||||||||||||||||||||
Sbjct 328 --AAACGGTGTGGGGATAATGATTCTTCATCCAC-ACGGCATAAACAGTTTGTTACCGCT 384
Query 501 ATTGAAAACCAGATTTATCGAGTAGAGTCTTCTCTGCAAGAGGCGTTA-AGCGAGAATGG 559
||||||||||||||| |||| ||||| ||||||||||||| || ||| || || |||||
Sbjct 385 ATTGAAAACCAGATTCATCGCGTAGAAACTTCTCTGCAAGAAGC-TTATAGTGAAAATGG 443
Query 560 GAAACAA-CCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGATGACCTT-GCCATG 617
|||| || ||| | |||||||| |||||||| ||||||||||||||||| || || |||
Sbjct 444 GAAA-AAGCCTCTCCGTTGGGTTGATCTTAATGAAGAAGAGCGTGATGAC-TTAGCAATG 501
Query 618 TTTCTATCTGGATCTTCTCAGA-CATCAGAGAGTTT 652
||||| ||||||||||||| || | ||| |||||||
Sbjct 502 TTTCTCTCTGGATCTTCTC-GAACTTCACAGAGTTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5