BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491728
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30230.1 | Symbols: | unknown protein; Has 42 Blast hits to... 1371 0.0
> AT4G30230.1 | Symbols: | unknown protein; Has 42 Blast hits
to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14806345-14807425 FORWARD
LENGTH=1081
Length=1081
Score = 1371 bits (742), Expect = 0.0
Identities = 973/1080 (90%), Gaps = 34/1080 (3%)
Strand=Plus/Plus
Query 1 ATGGAAACTTTAAAAAACACCAATCTCCAAAACCCTACTACTAAACTCCCAAAACCATTT 60
||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 32 ATGGAAACTACAAAAAACACTAATCTCCAAAA-CC--CTACTAAACTCCCAAAACCATTT 88
Query 61 CAACATCACCTAGAAGAAGAAAAAGAAGAAGCACTATCTCTCCGAGATCTTCCCCTCAAT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 89 CAACATCACCTAGAAGAAGAAAAAGAAGACGCACTATCTCTCCGAGATCTTCCCCTCAAA 148
Query 121 GCCGAGAACCCTAATCCCACCGCCACCCCAACCACCACCGAAGACCACCGTGAACCGTCA 180
||| |||| |||||| ||| |||||||||||||||||| |||||||||
Sbjct 149 GCCAAGAATCCTAAT-----------CCC-ACCACCACCGAAGACCACAAAGAACCGTCA 196
Query 181 ACGGAACTTTTTGAGTTTCTTACGTCAACCTCCTACGACGTTTCTCCGGCAGAAAACATA 240
|||||||||||||||||||| || ||| ||||||||||||| ||||||||||||| |||
Sbjct 197 ACGGAACTTTTTGAGTTTCTAACCTCATCCTCCTACGACGTAGCTCCGGCAGAAAATATA 256
Query 241 ATCTTTGGCGGCAAACTCATCCCTTTAAACTACCAAAATGCCCTCTTTTCACCTCCCGAA 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 257 ATCTTTGGCGGGAAACTCATCCCTTTAAACTACCAAAATGCTTTCTTTTCACCTCCTGAG 316
Query 301 CACATTAGCCCTCGAATTCGTGCACGGTCTGAGTCCTTATCCGCCATACAAGGCCATAAG 360
|||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 317 CACATTAGCCGTCGAATCCGTTCACGGTCTGAGTCCTTATCCGCGATACAAGGCCATAAG 376
Query 361 CTTAACCGTCCAGGTAGTTGTTCTGTGGCACGTCGTGACAATGCGGGACCTATGAGGACA 420
||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 377 CTTAACCGTCCCGGTAGTTGTACCGTGGCACGTCGTGACAATGCGGGACCTATGAGGGCA 436
Query 421 AGCCGTTCTTTAGATTACCGTAAGCTCTCACGTGGTCCAACCACCGTACATTCTCCACCG 480
||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 437 AGCCGCTCTTTAGATTATCGTAAGCTTTCACGTGGTCTAACCACCGTACATTCTCCACCG 496
Query 481 GAAAACATTTCACCGGCTAAAAACACGACGAAGGCTGAAACGGCGTCGTCGGGAAGTGGG 540
||||| | |||| || ||||||||||| |||| ||||||| |||| ||||||||||
Sbjct 497 GAAAATAGTTCATCGACTAAAAACACGGGGAAGCCTGAAACAACGTCTTCGGGAAGTGTA 556
Query 541 AAATGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTCCCTCCGGAG 600
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 557 AAAAGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTTCCGCCGGAG 616
Query 601 ATCGAACTCAAGGATATCAAGAGCCGCCAGGTTCGCCGGAATATTCCACCGGTTATGTTT 660
||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 617 ATCGAACTCAAGGATATAAAGAGCCGTCAGATTCGCCGGAATATTCCACCGGTTATGTTT 676
Query 661 CCATCTCCTGCTAACCGGAGATCTCGTAGATCTCGATCACCGTCACCGTCACCTTCACCT 720
||||||||||||||| ||||| ||||| ||||||| ||| || ||||| ||||||
Sbjct 677 CCATCTCCTGCTAACAGGAGAGCTCGTGGATCTCG------GTCGCCATCACCGTCACCT 730
Query 721 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 790
Query 781 CCGTTTTGGATTCCCCATTCATAAATTACTATATTATCCCTATGAACATTGTGTGCGGT- 839
||||||||| |||| ||| |||||||||||||||||| |||| |||||||||| |||||
Sbjct 791 CCGTTTTGGGTTCCTCATCCATAAATTACTATATTATTCCTACGAACATTGTGCGCGGTT 850
Query 840 ACTTGCTTTGCCGTTGTTTAAAAAGGATAGGAACGTCATTTAGCATAAGAAATATCGATA 899
||||||| |||||||| |||| |||||||||| |||||||||| ||||||||||||||||
Sbjct 851 ACTTGCTCTGCCGTTGATTAAGAAGGATAGGATCGTCATTTAGTATAAGAAATATCGATA 910
Query 900 TTGTTTAATTTATTTTGTGAAAGAATGTCGATATTGTAATTTATTTGGTGAATCGATAAT 959
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 911 TTGTT-AATTTATTTTGTGAAAGAATGTCGAAATTGTAATTTATTTGGTGAATCGATAAT 969
Query 960 AGTTTGGACCATAATATATCTTATTCACACtttttttctttttctttgattttttcgtta 1019
|||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 970 AGTTTGGACCATAACACATCTTATTCACACCTTTTT-CTTTTTCTTTGATTTTTTCGTTA 1028
Query 1020 ttttgtattttgtatttcagctcatttgttagaatatttcaatatatattttAATATAAT 1079
|||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 1029 TTTTGTATTT-------CAGCTCATTT---AGAATATTTCAATATATATTTTAATAAAAT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5