BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491730
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30200.2 | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | ... 3892 0.0
> AT4G30200.2 | Symbols: VEL1, VIL2 | vernalization5/VIN3-like
| chr4:14786633-14790501 REVERSE LENGTH=2662
Length=2662
Score = 3892 bits (2107), Expect = 0.0
Identities = 2452/2609 (94%), Gaps = 61/2609 (2%)
Strand=Plus/Plus
Query 1 tctctctctctctctctctctctctctcttctctGGTGTA-TCCGTTCTCCGGGAAGTTC 59
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 80 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCGGTGTATTCCGTTCTCCGGGAATTTC 139
Query 60 TCCGAAGAGGGAGAGA-G-aaaaaaaaCCGTTCGATTCAA--TC-TC--T--T-GACGAA 109
|||||||||||||||| | |||||||| ||| |||||||| || || | | ||||||
Sbjct 140 TCCGAAGAGGGAGAGAGGAAAAAAAAAACGTCCGATTCAATCTCTTCGTTGCTCGACGAA 199
Query 110 TTTTTCTTAAGCTTTCCTTATTGGGGATTTGAAGATTCTGAGTGGTTGTTATGATGATAA 169
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||
Sbjct 200 TTTTTCTTAAGCTTTCCTTATTGGAGATTTGAAGATTCTGAGTGGTTG-T-T-ATGATAA 256
Query 170 TGTGGGTTTGATTAGTTCTT----GACAGTTTCTCTACGCTAATGGATTCTTCTCTGGAT 225
|||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 257 TGTGGGTTTGATTAGTTCTTCACACACAGCTTCTCTACGCTCATGGATTCTTCTCTCGAT 316
Query 226 GGAGCTGCAGGTGACTCATCGAAATGCGGTGAAATGAGTGTTGATGAGAAGAGACAGCTT 285
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 317 GGAGCTGCAGGTGACTCATCGAAATGCAGTGAAATGAGTGTTGATGAGAAGAGACAGCTT 376
Query 286 GTTTATGAACTTTCGAAGCAATCACATCTAGCTTCTGAGGTCTTGCAGGCATGGAGCCGG 345
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 377 GTTTATGAACTGTCGAAGCAATCACATCTAGCTGCTGAGGTCTTGCAGGCATGGAGCCGC 436
Query 346 CAAGAGATTCTACAGATCTTATGCGCAGAAATGGGAAAAGAAAGGAAGTATACTGGCTTG 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 437 CAAGAGATTCTACAGATCTTATGCGCAGAAATGGGAAAAGAAAGGAAGTATACTGGTTTG 496
Query 406 ACCAAAGTCAAGATCATCGAGACCCTTTTGAAAATTGTATCCGAGAAAAACTCTGGAGAG 465
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 497 ACCAAAGTCAAGATCATCGAGACCCTTTTGAAAATTGTATCTGAGAAAAACTCTGGAGAG 556
Query 466 AATGAGGGGAAGAAGAGAGATTCTGATTGTTTGCCTATTCAGAGAAACACAAAGAGACAA 525
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 557 TGTGAAGGGAAGAAGAGAGATTCTGATTGTTTGCCTATTCAGAGAAACACTAAGAGACAA 616
Query 526 AGGAAGGTCGATAATCCTTCTCGGTATGTGCTTCCAGCAAGCAACAACGTAACAAGCAAC 585
|||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 617 AGGAAGGTTGATAATCCTTCTCGGTATGTGATTCCAGCAACCAACATTGTAACAAGCAAC 676
Query 586 AATGCCTCAGGGAGCTGCAGCTCGGTTAATACTAAAGGTGAGAGTACT---ATCTACTGC 642
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 677 AATGCCTCAGGGAGCTGCAGCTCGGTTAATACTAAAGGTGAGAGTACTACCATCTACTGC 736
Query 643 AAGAACTTGGCTTGCCGTGCTGTAATGAGACAGGAAGACTCATTTTGCAGAAGGTGTTCC 702
|| || |||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 737 AAAAATTTGGCTTGTCGTGCTGTACTGAGACAGGAAGACTCGTTTTGCAGAAGGTGTTCA 796
Query 703 TGTTGCATCTGTCGTAAGTATGATGATAACAAAGATCCTAGTCTCTGGTTAACATGTAGC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TGTTGCATCTGTCGTAAGTATGATGATAACAAAGATCCTAGTCTCTGGTTAACATGTAGC 856
Query 763 TCAGATCCTCCATTCGAGGGTGAGTCTTGCGGATTCTCGTGTCATCTTGAATGTGCTTTC 822
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TCAGATCCTCCATTTGAGGGTGAGTCTTGCGGATTCTCGTGTCATCTTGAATGTGCTTTC 916
Query 823 AAGACTGAAAAATCCGGTCTTGGAAAAGACAAGCAAAGTGAGGGATGCTGCTTCTATTGT 882
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AACACTGAAAAATCCGGTCTTGGAAAAGACAAGCAAAGTGAGGGATGCTGCTTCTATTGT 976
Query 883 GTCTCTTGCGGTAAAGCAAACAGTTTGCTTGAATGTTGGAAGAAGCAATTGACGATTGCT 942
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 977 GTCTCTTGCGGTAAAGCAAACAGTTTGCTTGAATGCTGGAAGAAGCAATTGACGATTGCT 1036
Query 943 AAAGAAACCAGAAGGGTAGATGTGCTTTGTTACCGTCTTTTCTTAGTTCAGAAACTATTG 1002
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1037 AAAGAAACCAGAAGGGTAGAAGTGCTTTGTTACCGTCTTTTCTTAGTCCAGAAACTATTG 1096
Query 1003 AAGAGCTCAACTAAATACCGAGATCTGTGT-ATGGTTGTGGATGAAGCTGTCAAGAGTCT 1061
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||
Sbjct 1097 AAGAGCTCAACTAAATACCGAAATCTGTGTGA-GGTTGTGGATGAAGCTGTCAAGACTCT 1155
Query 1062 TGAAGCTGATGTAGGTCCTCTCACTGGTCTCCCTATGAAAATGGGTAGAGGAATTGTAAA 1121
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1156 TGAAGCTGATGTGGGTCCTCTCACTGGTCTTCCTATGAAAATGGGTAGAGGAATTGTAAA 1215
Query 1122 CAGACTTCATTCGGGACCCGATGTGCAGAAACTTTGCTCTTCTGCTCTTGAATCTCTTGA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CAGACTTCATTCGGGACCCGATGTGCAGAAACTTTGCTCTTCTGCTCTTGAATCTCTTGA 1275
Query 1182 AACTCTAGCAACTGCACCTCCGGATGTTGCTGCATTACCTTCATCTCGCAGCTCCAAGAT 1241
|||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1276 AACTATAGCAACTACACCTCCTGATGTTGCTGCATTACCTTCACCTCGCAGCTCCAAGAT 1335
Query 1242 TCAGCAAGATTGTTCTTATGTATTGAGCAATGAGATATCTGCAGATACAGCAACCACAGG 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GCAGCAAGATTGTTCTTATGTATTGAGCAATGAGATATCTGCAGATACAGCAACCACAGG 1395
Query 1302 ATCAACCAAGATCAGGTTCGAGGATGTTAACGCGACTTCACTCACAGTGGTTCTAGCCTC 1361
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1396 ATCAACCAAGATCAGGTTCGAGGATGTAAACGCGACTTCACTTACAGTGGTTCTCGCCTC 1455
Query 1362 TAATGAAATTCCCTCACCTCCAAACATCGTCCACTACAGTATTTGGCATCGCAAGGTACC 1421
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1456 TAATGAAATTCCCTCACCTCCAAACATCGTTCACTACAGTATTTGGCATCGTAAGGTACC 1515
Query 1422 AGAAAAAGATTACCCGGAGAAATCGACTTGCACATTGTTTACTCCAAACACAAGATTTGT 1481
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1516 AGAAAAAGATTACCCGGAGAAATCGACTTGCACATTGTTTATTCCAAACACAAGATTTGT 1575
Query 1482 TGTCTCTGGATTAGCTCCAGCTTCCGAGTATTGCTTCAAAGTTGTGTCCTATAGTGGAAC 1541
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1576 TGTCTCTGGATTAGCTCCAGCTTCTGAGTACTGCTTCAAAGTTGTGTCCTATAGTGGAAC 1635
Query 1542 CAGAGAAATGGGCGTCGATGAAATCAATGTTTTGACACGTAGCGCTGAAGAAGGAGCGAA 1601
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CAGAGAAATGGGCGTTGATGAAATCAATGTTTTGACACGTAGCGCTGAAGAAGGAGCGAA 1695
Query 1602 TTGCTCTTCGGGAGTCGAAAGAAGCGAAAGCCCTCTCACAAATTGCAGCACATTGTCTTC 1661
||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1696 TTGCTCTTCGGCAGTGGAAAGAAGCGTAAGCCCTCTCACAAATTGCAGCACATTGTCTTC 1755
Query 1662 TAATCCTTCTTCTGTGGAAGCTGAGTCCAACAACGATTACATTGTCCCAAAGAAGCCATC 1721
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TAATCCTTCTTCTGTTGAAGCTGAGTCCAACAACGATTACATTGTCCCAAAGAAGCCATC 1815
Query 1722 ---AAAGAACGACA-ACAACAATTCTCCTTCAGTTGATGAAAGTGCTGCTAAAAGGGCGA 1777
||||||||| | ||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1816 TTCAAAGAACGA-AGACAACAATTCTCCTTCAGTCGATGAAAGTGCTGCGAAAAGGATGA 1874
Query 1778 AGAGGACAACCGAATCAGACATTGTACAGATAGAGAATAACGTTGAACAGATTGTGTTGT 1837
||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 1875 AGAGGACAACCGACTCAGACATTGTACAGATTGAGAAGGACGTTGAGCAGATTGTGTTGT 1934
Query 1838 TGGAGGAGGAAGAACAAGAAGCTGTTCTCGATAAGAACGGATCAGGATCCGGATCCGGAT 1897
|||| || |||||||||||||||||||| ||||||| |||| | || | | |
Sbjct 1935 TGGATGATGAAGAACAAGAAGCTGTTCTGGATAAGA-CGGA--A---TC----T--G-A- 1980
Query 1898 CTGAAACTCCAGCCCTGGTTACTACGAAAAATCTTGCTAGTAATCGAAACAATTCAGATG 1957
|| |||||| | ||||||||||||||| ||||| | |||||||||||| ||||||||
Sbjct 1981 ---AA-CTCCAGTCGTGGTTACTACGAAAAGTCTTGTTGGTAATCGAAACAGTTCAGATG 2036
Query 1958 CGAGTTTGCCAATTACTCCCTTCAGGTCAGATGAAATCAAGAACCGTCAAGCTAGAATCG 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 CGAGTTTGCCAATTACTCCCTTCAGGTCAGATGAAATCAAGAACCGTCAAGCTAGAATCG 2096
Query 2018 AAAAATCGGTTAAAGACAACTGTAACAACGGTGATCATTCAGCGAATGGAGGAACAGAGA 2077
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2097 AAATATCGATGAAAGACAACTGTAACAACGGTGATCATTCAGCGAATGGAGGAACAGAAA 2156
Query 2078 GTGGACTAGAGCATTGTGTGAAGATCATAAGACAGCTCGAGTGTTCAGGACATATCGACA 2137
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2157 GTGGATTAGAGCATTGTGTGAAGATCATAAGACAACTCGAGTGTTCAGGACATATCGATA 2216
Query 2138 AGAATTTCAGACAGAAGTTTCTGACTTGGTATAGCTTAAGAGCAACGTCACAAGAGATTA 2197
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2217 AGAATTTCAGACAGAAGTTTCTGACTTGGTATAGCTTGAGAGCAACGTCACAAGAGATTA 2276
Query 2198 GAGTTGTGAAGATATTCATTGATACGTTTATTGATGATCCCATGGCTTTAGCTGAGCAGC 2257
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2277 GAGTTGTGAAGATATTCATTGATACATTTATTGATGATCCCATGGCTTTGGCTGAGCAGC 2336
Query 2258 TCATAGATACTTTCGACGACCGCGTTTCGATAAAGCGTTCTGCGATTGGTGGTAGCGGTG 2317
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2337 TCATTGATACTTTCGACGACCGTGTTTCGATAAAGCGTTCTGCGGTTGGTGGTAGCGGTG 2396
Query 2318 CGTCTGCGGTTGTTCCATCTGGATTCTGTATGAAGTTGTGGCATTAGAGA-TGGGGAGAT 2376
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 2397 CGTCTGCAGTTGTTCCATCTGGATTCTGTATGAAGTTGTGGCATTAGAGAATGGGAACTT 2456
Query 2377 -TGCTCTGtttttttttCAAGTCATTTTCAAAACGTTATTCTAATTATTGGGAAATTTGC 2435
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GTGCTCTGTTTTTTT--CAAGTCATTTTCAAAACGTTATTCTAATTATTGGGAAATTTGC 2514
Query 2436 ATTATTGGAACATTTCCATGCAAGAACAGTAGTACTGTTGCTATCGAATAGtttgt-ttt 2494
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 2515 ATTATTGGAACATTTCCATGCAAGAACAGTAGTACTGTTGCTATCGAATAGATCGTCTTT 2574
Query 2495 gtcggattatttattttatttt-a-tggatttgattccatttataatttagta------c 2546
|||||||||||||||| ||||| | |||||||||||||||||||||||||||| |
Sbjct 2575 GTCGGATTATTTATTT-ATTTTTAGTGGATTTGATTCCATTTATAATTTAGTAATTAGTC 2633
Query 2547 -tagactgaattattatAATTTCGTTGAC 2574
|||||||||||||| | |||||||||||
Sbjct 2634 CTAGACTGAATTATTCTTATTTCGTTGAC 2662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127775203821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5