BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491737
Length=3890
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30160.2 | Symbols: VLN4 | villin 4 | chr4:14753349-14760189... 3062 0.0
> AT4G30160.2 | Symbols: VLN4 | villin 4 | chr4:14753349-14760189
FORWARD LENGTH=3462
Length=3462
Score = 3062 bits (1658), Expect = 0.0
Identities = 1791/1854 (97%), Gaps = 13/1854 (1%)
Strand=Plus/Plus
Query 479 TGGTATTGAGATATGGCGTATAGAGAATTTCCTCCCTACCCCCATTCCAAAATCTTCTAT 538
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 320 TGGTATTGAGATATGGCGTATAGAGAATTTCATCCCTACCCCAATTCCAAAATCTTCTAT 379
Query 539 TGGGAAGTTTTTCACCGGAGATTCTTACATAGTATTGAAGACAACGGCGTTAAAAACTGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TGGGAAGTTTTTCACCGGAGATTCTTACATAGTATTGAAGACAACGGCGTTAAAAACTGG 439
Query 599 TGCATTGCGCCATGATATCCATTACTGGCTTGGTAAAGATACCTCTCAGGATGAAGCCGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGCATTGCGCCATGATATCCATTACTGGCTTGGTAAAGATACCTCTCAGGATGAAGCCGG 499
Query 659 GACTGCTGCAGTTAAGACAGTTGAATTAGATGCTGCTCTTGGAGGTCGTGCAGTTCAGTA 718
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 500 TACTGCTGCAGTTAAGACAGTTGAATTAGATGCTGCTCTAGGAGGTCGTGCAGTGCAGTA 559
Query 719 TCGGGAAGTTCAAGGCCACGAAACCGAGAAATTCTTGTCTTATTTTAAGCCATGTATCAT 778
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 560 TCGGGAAGTTCAAGGCCACGAGACTGAGAAATTCTTGTCTTATTTTAAGCCATGTATCAT 619
Query 779 TCCTCAAGAAGGTGGAATAGCATCTGGATTCAAACATGTGGTAGCTGAAGAACATACTAC 838
|||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 620 TCCTCAAGAAGGTGGAGTAGCATCAGGATTCAAGCATGTCGTAGCTGAAGAACATATTAC 679
Query 839 CCGCTTGTTCGTCTGCAGAGGAAAACATGTTGTCCA--T-------GTTCCTTTTGCTCG 889
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 680 CCGCTTGTTCGTCTGCAGAGGAAAACATGTTGTCCATGTCAAAGAGGTTCCTTTTGCTCG 739
Query 890 GAGTTCTTTAAACCATGACGATATTTACATTCTTGACACAAAGTCCAAGATTTTCCAATT 949
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GAGTTCATTAAACCATGACGATATTTACATTCTTGACACAAAGTCCAAGATTTTCCAATT 799
Query 950 CAATGGATCCAATTCAAGTATCCAGGAGAGAGCAAAAGCACTGGAAGTGGTTCAGTACAT 1009
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 800 CAATGGATCCAATTCTAGTATCCAAGAGAGAGCAAAAGCACTGGAAGTGGTTCAGTACAT 859
Query 1010 CAAAGATACTTACCATGATGGGACATGTGAAGTTGCAACAGTTGAGGATGGAAAACTTAT 1069
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 860 CAAAGATACTTACCATGATGGGACATGTGAAGTTGCTACAGTTGAGGATGGGAAACTTAT 919
Query 1070 GGCTGATGCTGACAGTGGAGAATTTTGGGGTTTCTTTGGTGGGTTTGCTCCACTACCTAG 1129
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 920 GGCTGATGCTGATAGTGGAGAATTTTGGGGTTTCTTTGGTGGGTTTGCTCCGCTACCTAG 979
Query 1130 GAAAACAGCTAATGATGAAGACAAAACTTATAATTCCGATATCACCAAATTATTTTGTGT 1189
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 980 GAAAACAGCTAATGATGAAGACAAAACTTATAATTCAGATATCACCAGATTATTTTGTGT 1039
Query 1190 CGAGGAGGGACAGGCAAATCCTGTTGAAGGCGATACATTGAAGAGGGAGATGCTGGATAC 1249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 CGAGAAGGGACAGGCAAATCCTGTTGAAGGCGATACATTGAAGAGGGAGATGCTGGATAC 1099
Query 1250 AAACAAGTGTTACATTCTTGATTGTGGAATTGAAGTGTTTGTTTGGATGGGAAGAACCAC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AAACAAGTGTTACATTCTTGATTGTGGAATTGAAGTGTTTGTTTGGATGGGAAGAACCAC 1159
Query 1310 TTCTCTTGATGATAGAAAAATTGCGAGTGGAGCAGCAGAAGAAATGATCCGTTCATCTGA 1369
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1160 TTCTCTTGATGATAGAAAAATTGCGAGTAAAGCAGCAGAAGAAATGATCCGTTCATCTGA 1219
Query 1370 ACGACCCAAATCGCAAATGATCCGCATAATAGAAGGGTTTGAAACCGTACCATTCCGATC 1429
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1220 ACGACCGAAATCGCAAATGATCCGCATAATAGAAGGGTTTGAAACAGTACCATTCCGATC 1279
Query 1430 AAAGTTTGAATCTTGGACTCAAGAAACTAACACAACCGTGTCAGAGGATGGTAGAGGCAG 1489
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1280 AAAGTTTGAATCTTGGACTCAAGAAACTAATACAACCGTGTCAGAAGATGGTAGAGGCAG 1339
Query 1490 AGTTGCTGCTCTTTTGCAACGACAAGGAGTAAATGTCAGAGGCCTGATGAAAGCTGCTCC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGTTGCTGCTCTTTTGCAACGACAAGGAGTAAATGTCAGAGGCCTGATGAAAGCTGCTCC 1399
Query 1550 GCCTAAAGAAGAGCCTCAAGTTTTCATCGATTGCACGGGAAATCTGCAGGTTTGGCGTGT 1609
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1400 GCCTAAAGAAGAGCCTCAGGTTTTCATCGACTGCACGGGAAATCTGCAGGTTTGGCGTGT 1459
Query 1610 AAATGGTCAGGCAAAGACTCTCCTTCAAGCTGCTGATCATTCAAAATTCTACAGTGGAGA 1669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 GAATGGTCAGGCAAAGACTCTCCTTCAAGCTGCTGATCATTCAAAATTCTACAGTGGAGA 1519
Query 1670 TTGCTATGTTTTCCAGTATTCTTATCCCGGAGAAGAAAAAGAAGAAGTCCTTATAGGAAC 1729
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1520 TTGCTATGTTTTCCAGTATTCTTATCCCGGAGAAGAAAAAGAAGAAGTTCTTATAGGAAC 1579
Query 1730 GTGGTTCGGCAAACAAAGTGTGGAGGAAGAAAGAGGTTCTGCAGTCTCTATGGCAAGCAA 1789
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 GTGGTTTGGCAAACAAAGTGTGGAGGAAGAAAGAGGTTCTGCAGTCTCTATGGCAAGCAA 1639
Query 1790 AATGGTTGAGTCAATGAAATTTGTCCCAGCCCAAGCTCGCATTTATGAAGGAAAGGAACC 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 AATGGTTGAGTCAATGAAATTTGTCCCAGCCCAAGCTCGCATTTATGAAGGAAAGGAACC 1699
Query 1850 CGTT-ATATTCTTCGTGATTATGCAAAGCTTTATCGTTTTCAAGGGTGGTATTAGCAGTG 1908
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 AATTCA-ATTCTTCGTGATTATGCAAAGCTTTATCGTTTTCAAGGGTGGTATTAGCAGTG 1758
Query 1909 GATACAAGAAATACATAGCCGAGAAAGAAGTTGACGATGATACATACAATGAGAATGGTC 1968
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1759 GATACAAGAAATACATAGCCGAGAAAGAAGTTGATGATGATACATACAATGAGAATGGTG 1818
Query 1969 TTGCTCTATTCCGCATTCAAGGGTCTGGTCCGGAAAATATGCAAGCTATACAAGTTGACC 2028
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 TTGCTCTATTCCGAATTCAAGGGTCTGGTCCGGAAAATATGCAAGCTATACAAGTTGACC 1878
Query 2029 CGGTTGCTTCATCACTGAACTCCTCATACTATTACATACTACATAATGATTCTTCCGTCT 2088
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1879 CGGTTGCTGCATCACTGAACTCCTCGTACTATTACATACTACATAATGATTCTTCCGTCT 1938
Query 2089 TTACTTGGGCTGGAAATCTATCAACCGCAACTGACCAAGAACTTGTCG-AAAGGCAGCTC 2147
||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||
Sbjct 1939 TTACTTGGGCTGGAAATTTATCAACCGCAACTGACCAAGAACTGG-CGGAAAGGCAGCTA 1997
Query 2148 GATCTGATTAAGCCAAATCTACAGGCTAGAGCACAAAAGGAAGGATCAGAATCAGAACAG 2207
||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1998 GATCTGATTAAGCCAAATCAACAATCTAGAGCACAAAAGGAAGGTTCAGAATCAGAACAG 2057
Query 2208 TTCTGGGAGTTATTAGGAGGCAAAGCTGAATATTCGAGCCAAAAGCTCACGAAGGAACCC 2267
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2058 TTCTGGGAGTTATTAGGAGGCAAAGCTGAATATTCGAGCCAAAAGCTCACAAAGGAACCC 2117
Query 2268 GAGCGTGACCCTCACTTGTTCTCTTGTACATTCACAAAAGAAATTCTGAAGGTG 2321
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2118 GAGCGTGACCCTCACTTGTTCTCTTGTACATTCACAAAAGAAGTTCTCAAGGTG 2171
Score = 1729 bits (936), Expect = 0.0
Identities = 1018/1058 (96%), Gaps = 3/1058 (0%)
Strand=Plus/Plus
Query 2319 GTGACAGAGATACATAACTTCACACAGGATGACTTGATGACCGAAGATATATTTATAATA 2378
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2196 GTGACAGAGATATATAACTTTACACAGGATGACTTGATGACCGAAGATATATTTATCATA 2255
Query 2379 GACTGTCACTCAGAAATCTTTGTCTGGGTTGGCCAAGAAGTAGTCCCAAAGAGCAAGTTA 2438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2256 GACTGTCACTCAGAAATCTTTGTCTGGGTTGGCCAAGAAGTAGTCCCAAAGAACAAGTTA 2315
Query 2439 CTAGCTTTAAGTATTGGAGAGAAATTCATCGAGAAAGATTCTCTCCTGGAGAAGTTATCC 2498
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2316 CTAGCTTTAACTATTGGAGAGAAATTCATCGAGAAAGATTCTCTCCTGGAGAAGTTATCC 2375
Query 2499 CCTGAAGCCCCTATATATGTGATCATGGAAGGCGGTGAGCCGTCATTCTTCACCAGGTTT 2558
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2376 CCTGAAGCCCCTATTTATGTGATCATGGAAGGCGGTGAGCCGTCATTCTTCACCCGGTTC 2435
Query 2559 TTCACTTCCTGGGATTCCTCAAAATCCACTATGCATGGAAACTCATTCCAAAGAAAACTT 2618
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2436 TTCACTTCTTGGGATTCCTCAAAATCCGCTATGCATGGAAACTCATTCCAAAGAAAACTT 2495
Query 2619 AAAATTGTCAAAAATGGTGGAACTCCAGTTGCAGATAAACCGAAACGAAGAACTCCAGCT 2678
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2496 AAAATTGTCAAAAATGGTGGAACTCCAGTGGCAGATAAACCAAAACGAAGAACTCCAGCT 2555
Query 2679 TCATATGGTGGCCGTGCCAGCGTTCCTGACAAGTCGCAGCAGCGGTCAAGAAGTATGTCG 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2556 TCATATGGTGGCCGTGCCAGCGTTCCTGACAAGTCGCAGCAGCGGTCAAGAAGCATGTCA 2615
Query 2739 TTTAGTCCAGACAGGGTTCGCGTGAGGGGCAGATCTCCAGCGTTCAATGCACTCGCAGCA 2798
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2616 TTTAGTCCAGACAGGGTTCGCGTGAGGGGCAGATCTCCGGCGTTCAATGCACTCGCAGCA 2675
Query 2799 ACATTTGAGAGCCAAAATGCAAGAAACCTCTCAACTCCTCCCCCAGTAGTTAGAAAACTC 2858
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2676 ACATTTGAGAGCCAAAATGCAAGAAACCTGTCAACTCCTCCCCCAGTAGTTAGGAAACTC 2735
Query 2859 TACCCGAGATCTGTTACTCCTGACTCCTCAAAGTTTGCTCCCGCTCCCAAGTCTTCGGCC 2918
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2736 TACCCAAGATCTGTTACTCCTGACTCCTCAAAGTTTGCTCCCGCTCCCAAGTCTTCAGCC 2795
Query 2919 ATTGCTTCTCGTAGTGCACTTTTCGAAAAAACACCTCCCCAAGAACCTTCAATTCCAAAA 2978
|| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 2796 ATCGCTTCTCGAAGTGCACTTTTCGAAAAAATACCTCCACAAGAACCTTCAATTCCAAAA 2855
Query 2979 CCACTCAAAGCGAGCCCGAAGACACCTGAGTCTCCAGCGCCAGAATCCAACTCAAAAGAA 3038
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2856 CCAGTCAAAGCGAGCCCGAAGACACCTGAGTCTCCAGCGCCAGAATCCAATTCAAAAGAA 2915
Query 3039 CAGGAAGAGAAAAAGGAAAATGACAAGGAGGAGGAGAAATCGATGAGCAGCCGGTTAGAA 3098
|| ||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||
Sbjct 2916 CAAGAAGAGAAAAAGGAAAATGACAAGGAGGAGG-G--ATCAATGAGCAGCCGGATAGAA 2972
Query 3099 TCTCTGACGATTCAAGAAGATGCTAAAGAAGGAGTCGAAGACGAGGAAGATTTACCAGCT 3158
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2973 TCTCTTACGATTCAAGAAGATGCTAAAGAAGGAGTCGAAGACGAGGAAGATTTACCAGCT 3032
Query 3159 CACCCTTACGAACGTCTCAAGACAACTTCCACTGATCCTGTCTCAGACATTGATGTAACA 3218
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3033 CACCCTTATGATCGTCTCAAGACAACTTCCACTGATCCTGTCTCTGACATTGATGTAACA 3092
Query 3219 AGGAGAGAGGCTTACCTTTCATCTGAGGAGTTCAAGGAGAAATTCGGTATGACGAAAGAA 3278
||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 3093 AGGAGAGAGGCTTACCTTTCATCAGAAGAGTTCAAGGAGAAATTTGGCATGACGAAAGAA 3152
Query 3279 GCTTTCTACAAGCTGCCTAAATGGAAACAGAACAAATTCAAAATGGCTGTTCAGCTTTTC 3338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3153 GCTTTCTACAAGCTGCCTAAATGGAAACAGAACAAATTCAAAATGGCTGTTCAGCTTTTC 3212
Query 3339 TGAGAAATAATCCTTCTTCTTCTCCATCAAAAGATCCG 3376
||||| ||||||||||||||||||||||||||||||||
Sbjct 3213 TGAGATATAATCCTTCTTCTTCTCCATCAAAAGATCCG 3250
Score = 281 bits (152), Expect = 3e-74
Identities = 162/167 (97%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 283 GATTGGATCTGGGCTTGGAGCTGAATAGCGGATTTGTACAAGGTTATTATTAGTCTTCTC 342
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 154 GATTGGATCTGGGCTTGGAGCTGAATAGCGGATTTGTATAAGGTTATTATTAGTCTTCTC 213
Query 343 TATCGTTGTGGTGTTCATAAGTTGGAGAAAGTGGTAAAGACTGCTTAAGTATGTCTGTTT 402
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TATCGTTGCGGCGTTCATAAGTTGGAGAAAGTGGTAAAGACTGCTTAAGTATGTCTGTTT 273
Query 403 CAATGAGAGATTTAGATCCAGCTTTCCAAGGAGCTGGACAGAAGGCT 449
| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 274 CTATGAGAGATTTAGATCCAGCTTTCCAAGGAGCTGGACAGAAAGCT 320
Score = 75.0 bits (40), Expect = 5e-12
Identities = 51/56 (91%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1 AATTGAAGAATGAAGAAATAAACAGTTGATGGGTT-T-CTCTTCTTGTGTTGTTGG 54
||||||||||||||||||||||||||||||||||| | | |||||| | |||||||
Sbjct 99 AATTGAAGAATGAAGAAATAAACAGTTGATGGGTTCTTCGCTTCTTCTCTTGTTGG 154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 193794900809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5