BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491739
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30140.1 | Symbols: CDEF1 | GDSL-like Lipase/Acylhydrolase s... 1736 0.0
AT2G19060.1 | Symbols: | SGNH hydrolase-type esterase superfam... 233 3e-60
> AT4G30140.1 | Symbols: CDEF1 | GDSL-like Lipase/Acylhydrolase
superfamily protein | chr4:14738387-14740676 REVERSE LENGTH=1391
Length=1391
Score = 1736 bits (940), Expect = 0.0
Identities = 1133/1223 (93%), Gaps = 25/1223 (2%)
Strand=Plus/Plus
Query 1 ACAATAAGCCAACTTTTCTTCTTCTCTCATTAAGC--TTT-TTCTCTCCTCATTTTTCGT 57
|||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 50 ACAATAAGCCCACTTTTCTTCTTCTCTCATCAAGCTTTTTCTTCTCTCCTCATTTTTCGT 109
Query 58 GT-A----A-TT-CG-AAAATGGTCGAGGGAGAGTCCAAGGCATTGTGGATTATTGTGGC 109
| | | || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 110 ATAATTCGATTTGCGAAAAATGGTCGAGGGAGAGTCCAAGGCATTGTGGATTATTTTGGC 169
Query 110 CACCGTGTTTGCAGTCGCGGCGGTCGCACCAGCGGCACATGGACAACAAGCGCCGTGTTA 169
|||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||
Sbjct 170 CACCGTGTTTGCAGTCGCGGCGGTGGCACCAGCGGTGCATGGACAGCAAACGCCGTGTTA 229
Query 170 CTTCGTGTTTGGAGACTCTGTCTTCGACAATGGTAACAACAATGCCTTGAACACCAAGGC 229
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 230 CTTCGTGTTTGGAGACTCTGTCTTCGACAACGGTAACAACAATGCCTTGAACACCAAGGC 289
Query 230 TAAGGTCAACTATTTACCTTATGGTATAGATTTTC-CTCAAGGTCCGACCGGTCGGTTTA 288
||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||
Sbjct 290 CAAGGTCAACTATTTACCTTATGGTATAGA-TTACTTTCAAGGTCCAACCGGTCGGTTTA 348
Query 289 GCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTCAATGACTCAATTC 348
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 349 GCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTCAATAACCCAATTC 408
Query 349 CACCGTTCGCCGGAGCATCACAAGCACAAGCTAACATCGGACTCAACTATGCTTCCGGTG 408
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 409 CACCATTTGCCGGAGCATCACAGGCACAAGCTAACATCGGACTCAACTATGCTTCCGGTG 468
Query 409 CCGGAGGTATCCGCGAAGACACCAGCGAAAATATGGGTGAGAGAATCAGTTTGAGAAAGC 468
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 469 CCGGCGGTATCCGCGAAGAAACCAGCGAAAATATGGGTGAGAGAATCAGTTTGAGACAGC 528
Query 469 AAATAAACAACCACCTGTCGGCGATCATAAACGCGGCGGTGCCACGGAGTCAGTTAAGGC 528
|| ||||||||||| | || || ||||||| |||||||||||||| ||||| ||||||||
Sbjct 529 AAGTAAACAACCACTTTTCCGCTATCATAACCGCGGCGGTGCCACTGAGTCGGTTAAGGC 588
Query 529 AATGTCTATACACAATCAACATCGGAAGCAACGATTACCTCAACAACTACTTCTTGTCGC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AATGTCTATACACAATCAACATCGGAAGCAACGATTACCTCAACAACTACTTCTTGTCGC 648
Query 589 CTCCTACTTTAGCACGTCGTATATATAATCCTGACCAGTACGCTCGATCTCTCATACGCC 648
|||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 649 CTCCTACTCTAGCTCGTCGTCTATTTAATCCTGACCAGTACGCTCGATCTCTCATAAGCC 708
Query 649 TCTACCGTTTTTATTTGGA-GCAATTGTACGTACTAGGAGCGAGGAATGTAGCTTTGTTC 707
|||||||| | ||| || | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 TCTACCGTATCTATCTG-ACGCAATTGTACGTACTAGGAGCGAGGAATGTAGCGTTGTTC 767
Query 708 AGTATCGGTAAGATCGGATGTACACCACGAATTGTTGCTACCCTTGGTGGCGGCACTGGC 767
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 768 GGTATCGGTAAGATCGGATGTACACCACGGATTGTTGCTACCCTCGGTGGCGGCACTGGC 827
Query 768 TGTGCAGAAGAAGTGAACCAAGCCGCGAATC-TCTTCAACATTAAACTCAAAGACCTAGT 826
|| |||||||||||||||||||||| || || ||||||||| ||||||||||| ||||||
Sbjct 828 TGCGCAGAAGAAGTGAACCAAGCCGTGA-TCATCTTCAACACTAAACTCAAAGCCCTAGT 886
Query 827 CACTACTTTT-AACAACAAATCTGGAGCTAAGTTCACTTATGTTGATCTCTTCTCTGGAA 885
||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 887 CAC-AGATTTCAACAACAAACCGGGAGCTATGTTCACTTATGTTGATCTCTTCTCTGGAA 945
Query 886 ATGCTGAAGATTTCGCAGCTCTAGGGATTACGGTTGGTGATAGGAGTTGCTGTACTGTTA 945
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 946 ATGCTGAAGATTTCGCCGCTCTAGGGATTACGGTTGGTGATAGGAGTTGCTGTACGGTTA 1005
Query 946 ATCCGGGGGAAGAACTTTGTGCTGCGAACGGACCGGTTTGTCCAGACCGAAACAAATACA 1005
||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1006 ATCCGGGTGAAGAACTTTGTGCGGCGAACGGACCGGTTTGTCCAGACAGAAACAAATTCA 1065
Query 1006 TATTCTGGGATAACGTGCATACTACGGAAGTGATCAATACTGTGGTGGCTAACGCAGCGT 1065
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1066 TATTCTGGGATAACGTGCATACTACGGAAGTGATAAATACTGTGGTGGCTAACGCAGCGT 1125
Query 1066 TTAACGGACCTATAGCT-GCTCCGTTCAACATATCCCAGCTT-GTGAATTAATATTAGGG 1123
||||||||||||||||| | ||||||||||||||||||| || ||||||||| |||||||
Sbjct 1126 TTAACGGACCTATAGCTAG-TCCGTTCAACATATCCCAG-TTAGTGAATTAAAATTAGGG 1183
Query 1124 CTTTATATCCATTGTTAAAATGGCATAGTCC-TCTATGTAAATCCTGGTTTCGTCTAGAT 1182
|| ||| |||||||||||||||||||||||| | ||| |||| | |||||||||||||||
Sbjct 1184 CTCTAT-TCCATTGTTAAAATGGCATAGTCCCTTTATTTAAAACTTGGTTTCGTCTAGAT 1242
Query 1183 GGAAACCATATATCAGACACATA 1205
||||||||||||||||||||||
Sbjct 1243 TGAAACCATATATCAGACACATA 1265
> AT2G19060.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr2:8257000-8260545 FORWARD LENGTH=1811
Length=1811
Score = 233 bits (126), Expect = 3e-60
Identities = 357/464 (77%), Gaps = 33/464 (7%)
Strand=Plus/Plus
Query 149 TGGACAACAAG-CGCCGTGTTACTTCGTGTTT-GGAGACTCTGTCTTCGACAATGGTAAC 206
|||||||| || | || || || ||||| ||| |||||||||||||||||||||||||||
Sbjct 103 TGGACAACTAGTC-CCTTGCTATTTCGT-TTTCGGAGACTCTGTCTTCGACAATGGTAAC 160
Query 207 AACAATGCCTTGAACACCAAGGCTAAGGTCAACTATTTACCTTATGGTATAGATTTTCCT 266
||||||| ||| | ||| ||| || |||||||||| |||||| ||||| |||||| ||
Sbjct 161 AACAATGAGTTGGATACCCTGGCCAAAGTCAACTATTCACCTTACGGTATTGATTTTGCT 220
Query 267 CA-AGGTCCGACCGGTCGGTTTAGCAACGGTCGGAATATTCCAGACGTTATCGCTGAACT 325
| |||||| ||||| |||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct 221 -AGAGGTCCTACCGGGAGGTTCAGCAATGGTCGTAATATTCCCGACTTTATCGCTGAAGA 279
Query 326 AGCGGGT-TTCAATGACTCA-ATTCCACCGTTCGCCGGAGCATC-ACAAGCACAAGCTAA 382
| | | || | | | | | |||||||| ||| || ||||||| || | ||||||| |
Sbjct 280 ATTGAGAATT-AGTTA-TGACATTCCACCATTCACCAGAGCATCGACG-GAACAAGCTCA 336
Query 383 CATCGGACTCAACTATGCTTCCGGTG---CCGGAGGTATCCGCGAAGACACCAGCGAAAA 439
|| |||| | || || ||||| |||| ||||| | || |||||| || ||| || |
Sbjct 337 CACCGGAATAAATTACGCTTCTGGTGGTGCCGGAC-T-TCT-CGAAGAAACTAGCCAACA 393
Query 440 TATGGGTGAGAGAATCAGTTT-GAGAAAGCAAATAAAC-AACCACCTGTCGGCGATCATA 497
| | ||||| ||||||||||| || ||||||||||| | || |||| | | ||| ||
Sbjct 394 TTTAGGTGAAAGAATCAGTTTTGA-AAAGCAAATAA-CTAATCACCGGAAGATGATTATG 451
Query 498 AACG-CGGCG-GTGCCAC-GGAGTCAG-TTAAGGCAA-TGTCTATACACAATCAACATCG 552
| || ||| | || |||| |||| || ||||| || |||||||| ||||| || || |
Sbjct 452 A-CGGCGG-GAGTTCCACCGGAGA-AGCTTAAG--AAGTGTCTATATACAATTAATATTG 506
Query 553 GAAGCAACGATTACCTCAACAACTACTTCTTGTCGCCTCC-TAC 595
||||||| ||||| ||||||||||| ||| || || |||| |||
Sbjct 507 GAAGCAATGATTATCTCAACAACTATTTCATGCCGGCTCCCTAC 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5