BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491744
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30090.1 | Symbols: | | chr4:14708712-14711612 REVERSE LEN... 848 0.0
AT5G50190.1 | Symbols: | Unknown gene | chr5:20433507-20434543... 110 4e-23
> AT4G30090.1 | Symbols: | | chr4:14708712-14711612 REVERSE LENGTH=1498
Length=1498
Score = 848 bits (459), Expect = 0.0
Identities = 577/631 (91%), Gaps = 19/631 (3%)
Strand=Plus/Plus
Query 568 ATCAGAATACATACACACCCATACACGACCAGGATTATGACCTTAACGAAGCCACACTTG 627
||||||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 799 ATCAGAACACATACACATCCGTACACGACCCGGATTATGACCTTAACGAAGCCACACTTG 858
Query 628 GAGAGAGTACTAGTTGCCTTAGAGCCATATACTGAAAACGTAAGACATGGCTTTAAGAAG 687
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 859 GAGAGAGTACAAGTTGCCTTAGAGCCATATACTGAAAACGTAAGACATGGCTTTCAGAAG 918
Query 688 TTGGTTAACTCAACGAAAATCTACCATCAACAGGCTCAAGAAATGCTGAAGAACAATGAG 747
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TTGGTTAACTCAACCAAAATCTACCATCAACAGGCTCAAGAAATGCTGAAGAACAATGAG 978
Query 748 ATCACGAAACCGATTGCTACCATGGACTTAGCTTGGGTTGGGGCCACAGCTTTAATTGGC 807
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATCACCAAACCGGTTGCTACCATGGACTTAGCTTGGGTTGGGGCCACAGCTTTAATTGGA 1038
Query 808 TTCCCTCTTATATTCATCATCAAATTGCTTTCTGCAGTCTCCAATCCTAAGAGGAAGAAG 867
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1039 TTCCCTCTTATATTCATCATCAAATTGCTTTCTGCAGTCTCCAATCCTAAGGGGAAGAAG 1098
Query 868 AGATACAGCCATAAAAAAGAACCAACCATTGGGTATCGCAGAGCCAAACGCCGGCATCCT 927
||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1099 AGACACAACCATAAAAAAGAACCAACCACCGGGTACCGCAGAGCCAAACGCCGACATCCT 1158
Query 928 CACCAATGAAACAATAGAATTATAACTTGAGGAGCA-CAAAAAGGTGGTTTGTATATACC 986
||||||||| ||||||| | |||||||||| ||| | |||||||||||||||||||||||
Sbjct 1159 CACCAATGATACAATAGGACTATAACTTGAAGAG-ATCAAAAAGGTGGTTTGTATATACC 1217
Query 987 TTTCTGGTTTCTCAGACTTATAACAATTAAAT-TGTTTTGGCTGAAGAAGTTGA-GCAGA 1044
|||||||||||| |||||||||| | |||||| | | ||||||||||||||||| |||||
Sbjct 1218 TTTCTGGTTTCTGAGACTTATAATAGTTAAATATCTATTGGCTGAAGAAGTTGAAGCAGA 1277
Query 1045 GGAAGTTCTACAAAACT------CT-T---GACTCTCTGTATTGACAAAATCTTAGCACA 1094
|| ||||||||||||| || | ||||||||||| |||||||||||||| |||
Sbjct 1278 GGT-GTTCTACAAAACTATAGGTCTCTCTTGACTCTCTGTAGTGACAAAATCTTAGAACA 1336
Query 1095 ATCTTTT-CAGTTTTCATAGTTTATGGTTTTATAGTAGAGAAGAGAAGaaaaagaaaaaa 1153
||||||| ||||||||||||||||||||||| || || || |||||||| || ||||| |
Sbjct 1337 ATCTTTTTCAGTTTTCATAGTTTATGGTTTTTTA-TAAAGTAGAGAAGAGAA-GAAAAGA 1394
Query 1154 aaaGAGTTGTAAATCTTCTCACATGTGTTAC 1184
|||||||||||||||||||||||| || |||
Sbjct 1395 AAAGAGTTGTAAATCTTCTCACAT-TGATAC 1424
Score = 671 bits (363), Expect = 0.0
Identities = 455/498 (91%), Gaps = 12/498 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTTTTTTAAGCTACTTTTGTTTCTTTTTCTCGTAACGCTCCAAATTGCTTCATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTTTTTAAGCTACTTTTGTTTCTTTTTCTCGTAACGCTCCAAATTGCTTCATTC 60
Query 61 ACTGTAAACGGAGAAGCTTCTTCTTC--CC-CAGAGAACAATGGCTGCAATGGACTTCAA 117
|||| ||| ||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 61 ACTGGAAATGGAGAAGCTTCTTCTTCTTCCTCAGAGAACAATGGCTGCAATGGAGATCAA 120
Query 118 AACCATTTGCTTAACGAACTCAAATCCACTGTCTCTGCTCTTCAATCAATCATTACGGAG 177
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 121 AACCATTTGCTTAACGAACTCAAATCCACCGTCTCTGCTCTTCAATCAATCATCAAGGAG 180
Query 178 AAAAACCAAGAATTGCTTAGCAAGGAAAAGAAAATCCGAGGCTTGGAGTTATATATCAGG 237
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 181 AAAAACCAAGAATTGCTTAGCAAGGAAGAGAAAATCCGAGGTTTGGAGTTATATATCAGG 240
Query 238 GAGAAATCTTACTTGTTCGAGAGTGAGATTGATTTTTCTCAATTTGAGAATCCAGTAAAG 297
|||||| |||| ||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 GAGAAACCTTATTTGTTTGAGAGTGAAATTGATTTTTCTCAATTTGAGAATCCGGTAAAG 300
Query 298 CACGCCAGTGAAGTAGAAGAAAAGGTTTATGAACTTCAGAAACAGGTATTTGAACTAAAA 357
|| || |||||||||||||| |||||||||||||| |||||||||||||||| | |||||
Sbjct 301 CATGCGAGTGAAGTAGAAGAGAAGGTTTATGAACTACAGAAACAGGTATTTGGATTAAAA 360
Query 358 CGGGAAGTGGAAATGCAACGCACGAGAAGGCTCGAAATGGAAGCTGAAATCGCAGAGATA 417
||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||||| | |
Sbjct 361 CGGGAAGTGGAAACGCAACGCAAGAGAAGGCTCGAAGTGGAAGCTGAATTAGCAGATA-A 419
Query 418 -AAAGTTGCAGAACTTACCTCAAATCATGAAAAT---GATGGGAAATGGTTCTTGTCTAA 473
||||||||| |||||| |||||| | ||||||| |||||| ||||||||||||||
Sbjct 420 GAAAGTTGCACAACTTAGCTCAAAGCTTGAAAATATCGATGGG---TGGTTCTTGTCTAA 476
Query 474 ACTTGGTCTCAACACCGA 491
||||||||| ||| ||||
Sbjct 477 ACTTGGTCTTAAC-CCGA 493
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 510 GAAAATTGAGCAAGTCCAGAAATGGTCAGAGCCTCACATTGAAACCCTGAACTCA 564
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 576 GAAAATTGAGCAAGTCCAGAAATGGTCAGAGCCTCACATTGAAACACTGAACTCA 630
> AT5G50190.1 | Symbols: | Unknown gene | chr5:20433507-20434543
REVERSE LENGTH=683
Length=683
Score = 110 bits (59), Expect = 4e-23
Identities = 93/109 (85%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 602 TTATGACCTTAACGAAGCCACACTTGGAGAGAGTACTAGTTGCCTTAGAGCCATATACTG 661
||||||| || ||| |||||||| |||| | ||| ||||||||||||| |||||||||
Sbjct 303 TTATGACAATATGGAAACCACACTTTGAGAAAATACAAGTTGCCTTAGAGGCATATACTG 362
Query 662 AAAACGTAAGACATGGCTTT-AAGAAGTTGGTTAACTCAACGAAAATCT 709
||||||||||||||||||| || ||||||||||||| || |||||||
Sbjct 363 AAAACGTAAGACATGGCTTCGAA-AAGTTGGTTAACTGGAC-AAAATCT 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5