BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491747
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30070.1 | Symbols: LCR59 | low-molecular-weight cysteine-ri... 514 3e-145
> AT4G30070.1 | Symbols: LCR59 | low-molecular-weight cysteine-rich
59 | chr4:14697489-14698430 FORWARD LENGTH=565
Length=565
Score = 514 bits (278), Expect = 3e-145
Identities = 371/414 (90%), Gaps = 14/414 (3%)
Strand=Plus/Plus
Query 1 AAAATATGGAGA-GGATGACATCAATTGTCTTCATTGTTAACTTACTTATCATTTTTACG 59
|||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 56 AAAATATGGAGACCG-TGACATCACTTGTCTTCATTGTTAACTTACTTATCATTTTTACA 114
Query 60 TCAGTTGTGAATCAGACTAGAGCAGATACGTGTACAGATGGATTAGGTCT-TTGCAACGG 118
||||||||||||||| |||||| |||||| |||| |||||||||||| || |||||||
Sbjct 115 TCAGTTGTGAATCAGGCTAGAGGAGATACATGTATAGATGGATTAGG-CTATTGCAACAA 173
Query 119 CTGCGATGAGAGATGCAAGGCCAAGCACGGACCATCGAGCGAAAGCAACTGTGATCGCAG 178
|| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 174 TTGTGACGAGAGATGCAAGGCCAAGCACGGACCATCGAGCGAAAGCAGCTGTGATCGTAG 233
Query 179 TATTGGGGTAGG-GCTATGCGTGTGCTACTACCAATGTGGATC-CC-C-ATCACCACCCG 234
| ||||||| | ||| ||| ||||||||| |||||| ||| || | |||||||||||
Sbjct 234 TGTTGGGGT-GCCGCTGTGCAAATGCTACTACGAATGTGAATCTCCGCCATCACCACCCG 292
Query 235 TGCAG---AAGAAATGCAACGGTGGGGCTGGTATATGTAGTCAAAGATGTCAAGGAACA- 290
|| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 293 CGCCGCCGAAGAAATGCGACGGTGGGGCTGGTATATGTAGTCAAAGATGTCAAGGA-CAA 351
Query 291 TGTTGTGATATGAACTGTGCACAAAAGTATAATGGTGGACATGGATTTTGTAACACTCTT 350
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 352 TGTTGTGATATGAACTGTGCACAAAAGTATATTGGTGGACATGGATTTTGTAATACTCTT 411
Query 351 GGTACATTTAGTTTGTGCCAATGCGAATATCCTTGTTAAAGTCGGTTGACAAAA 404
||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGTACGTTTAGTTTCTGCCAATGCGAATATCCTTGTTAAAGTCGGTTGACAAAA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5