BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491750
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2654 0.0
AT2G19160.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1037 0.0
> AT4G30060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:14689129-14692480
REVERSE LENGTH=2003
Length=2003
Score = 2654 bits (1437), Expect = 0.0
Identities = 1829/2002 (91%), Gaps = 92/2002 (5%)
Strand=Plus/Plus
Query 1 AAAAATTTGCTTCCTCTGTTTCGAACCCAATT-GG-----T-GGCATCTTCGTCTTCATC 53
|||||||||||||||||||||||||||||||| || | | | ||||| |||||| |
Sbjct 12 AAAAATTTGCTTCCTCTGTTTCGAACCCAATTGGGCATCTTCGTCGTCTTCTTCTTCAAC 71
Query 54 -TTCATCATCGTCATCAATATATCTGTAGCTCCTTTCACAAGCATTTCTTCAATTTCATA 112
|||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||
Sbjct 72 ATTCATCATCGTCATCAATTTCTCTGTAGCT-CTTTCACAAGTATTTCTTCAATTTCATA 130
Query 113 GC--gagag-------a--gag-----agagatcagagagaaaaac-gaaacgaatccgt 155
|| ||||| | ||| |||||||||||||||| | ||||||||||||
Sbjct 131 GCGAGAGAGAAATAAAAGGGAGAACACAGAGATCAGAGAGAAATTCAAAAACGAATCCGT 190
Query 156 gagagaaaatcttaaaactgacaaagagaCG--TTA----TACATGCACATATATAGATA 209
| ||| | | ||||||||| |||||||||| ||| ||||||||| ||| ||| |
Sbjct 191 GTGAGGACGTTTTAAAACTGCCAAAGAGACGTTTTACTTTTACATGCAC--ATAGAGACA 248
Query 210 TACGTTTGTTTTGTGTAGCTATAGCTCTTTGAGAGTTTGAATTTTCCCGAGATCTTTGAC 269
||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 249 TACGTTTATTTTGTGTAGCTATAGCTC-TTAAGAGTTTGAATTTTCTCGAGATCTTTGAC 307
Query 270 CGGAGGGAAAACGAAGAAGATATAG-AAATCTAGC--AAC-ACGA--C-GA-TT-CG-G- 318
||||| |||||||| |||||||||| ||||||||| ||| |||| | || || | |
Sbjct 308 CGGAGCGAAAACGACGAAGATATAGAAAATCTAGCGAAACGACGATTCGGACTTGGGAGA 367
Query 319 --CTCTTGCCTTGTGCTTGGATCTGGTTCCGTTGTAAATTTCAGGTTCCAATT--CTCAG 374
||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |||
Sbjct 368 CTCTCTTGCGTTGTGCTTGGATCTGGTTCCGTTGTAAATTTGAGGTTTTGATTGAC-CAG 426
Query 375 ACGAAGTTAGCTTTTGTTCACCTAGATTAGGC---TATTGAGGTGTTGTTGTGGCTCTG- 430
| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 427 AGGAAGTTAGC-TTTGTTCATCTAGATTAGGCTATTATTGAGGTGTTGTTGTGGCTCTGA 485
Query 431 CG-AATAAAGGTTTTGATGAGATGAAGGCAGTTAAAAGATGGAGTCTAGGGAACTTAGGC 489
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 486 AGCAATAAAGGATTTGATGAGATGAAGGCAGTTAAAAGATGGAGTATAGGGAACTTA-GC 544
Query 490 -GATATTCCCGTGTCTTTGCCTGGAGCTCGACACCGTGCTCCT-C-CC-GCAAGACGACG 545
|| ||||||||||||||||||||||||||| ||||||||||| | || | |||| ||||
Sbjct 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604
Query 546 AGTATGGATCATCATGGTGCTTTCACTGATCAGCATGTTCTTTATTACGGCTTACATGTA 605
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 605 AGTATGGATCATCATGGTGCTTTCACTGATCACCATGTTCTTTATTATGGCTTACATGTA 664
Query 606 CCCTCATCATAGTAAAAGGGCTTGTTATATGATTTCATCAAGAGGATGCAAAGCTTTAGC 665
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 665 TCCTCATCATAGTAAACGTGCTTGTTATATGATTTCATCAAGAGGATGCAAGGCTTTAGC 724
Query 666 TGATTGGCTTCCACCTTCTCTGAGGGAATTTTCAGATGATGAGATTGCAGCTCGCGTAGT 725
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 725 TGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATGAGATTGCAGCTCGTGTAGT 784
Query 726 CATTAGAGAAATATTGAGTTCACCTCCTGTCATTAGAAAGAATTCTAAAATTGCATTCAT 785
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 785 CATTAGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATTGCTTTCAT 844
Query 786 GTTTTTAACTCCCGGTACATTACCTTTCGAGAGGCTTTGGGACAGATTTTTCCAGGGCCA 845
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 845 GTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTTCCTGGGCCA 904
Query 846 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 964
Query 906 TTACTTTGTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 965
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 1024
Query 966 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTCAGAGACACTTCAAACCAGCAATTTGT 1025
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1025 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTTAGAGACACTTCTAACCAGCAATTTGT 1084
Query 1026 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1144
Query 1086 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1204
Query 1146 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1264
Query 1206 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGATAGTCTTTACTACTCTAA 1265
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1265 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTCTTTACTACTCTAA 1324
Query 1266 ATTTCGGGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1325
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 ATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1384
Query 1326 CTATCTGCCAACATTCTTTCATATGCTCGATCCCGGTGGTATTTCTAACTGGACTGTAAC 1385
||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1385 CTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTAACTGGACTGTAAC 1444
Query 1386 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACGTATATGCCTGAGGATATCAC 1445
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1445 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACATATATGCCTGAGGATATCAC 1504
Query 1446 ACCCGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1505
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 ACACGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1564
Query 1506 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCAAAAGACCGTGCTACTT 1565
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1565 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCCAAAGACCGTGTTACTT 1624
Query 1566 GTTTGGAAGAAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1625
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1684
Query 1626 CACAAGATCAGTCACTTGGAATTTGTGATTAAAAG-AGTATTTTTCTTC-TATACACTCA 1683
|||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 1685 CACAAGATCAGTCACTTGGAATTTGTGATTAAAATCAG-ATTTTTCTTCATATACAC--A 1741
Query 1684 G-ATTCTTTGACCAATGTTCGTCTCCCCCACCCATATGAATCAAAATCACCTTTGAAGCT 1742
| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 1742 GTATTCTTTGACCAATGTTCGACTCCCCCACCCACATGAATCAATATCACCTTTGAAGCT 1801
Query 1743 GTAACACCACAAGTATAGAAGCTTAAGGAGGTAT-A----------CG-AT-----GCTT 1785
||||||| ||||| ||||||||||||||||||| | | || ||||
Sbjct 1802 GTAACACTGCAAGTCTAGAAGCTTAAGGAGGTATGAGATATTTTATCTCATAATATGCTT 1861
Query 1786 CATTTGGTTGGAAGGAGACGTTGGTTTTATTTTTATCTACTCTGttttttt---GGCTAT 1842
|||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||
Sbjct 1862 CATTTGGTTGGAAGGATACGTTGGTTTTATTCTTCTCTACTCTGTTTTTTTTTTGGCTAT 1921
Query 1843 AT--CTCATTGTTACGTTACTGTTGTTGTGTGTTCAGAATGTTAAACAAACAAA--TTAT 1898
|| ||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1922 ATATCTCATTGTTACTTTACTGTTGTTTTGTGTTCAGAATGTTGAACAAACAAAAGTTAT 1981
Query 1899 ACAGGTTTATAGAGTTTCTTTG 1920
||||||||||||||||||||||
Sbjct 1982 ACAGGTTTATAGAGTTTCTTTG 2003
> AT2G19160.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr2:8309816-8314008
FORWARD LENGTH=2064
Length=2064
Score = 1037 bits (561), Expect = 0.0
Identities = 1021/1239 (82%), Gaps = 47/1239 (4%)
Strand=Plus/Plus
Query 416 GTTGTTGTGGCTCTGCGAATAAAGGTTTTGATGAGATGAAGGCAGTTAAAAGATGGAGTC 475
||||||| | | |||| ||||||||||| |||||||||||||| |||| ||||| |||
Sbjct 434 GTTGTTGCAG-TATGCG-ATAAAGGTTTTTATGAGATGAAGGCAATTAAGGGATGGCGTC 491
Query 476 TAGG-GAACTTAGGCGATATTCCCGTGTCTTTGCCTGGAGCTCGACACCGTGCTCCTCCC 534
|||| || ||| ||| | | |||||||||||| ||||| || |||||||||
Sbjct 492 TAGGCAAAATTA-ATTATA-T-GC-AGTCTTTGCCTGGGGCTCGCCATCGTGCTCCT--- 544
Query 535 GCAA-GACGACGAGTATGGATCA-T-CATGGTGCTTTCACTGATCAGC-ATGTTCT-TTA 589
||| || | | | ||||||||| | || |||||||||||||| ||| ||||| | | |
Sbjct 545 ACAAGGAAGCCTA-TATGGATCATTGCA--GTGCTTTCACTGAT-AGCAATGTT-TGTAA 599
Query 590 TTACG-GCTTACATGTACCCTCATCATAGTAAAAG-GGCTTGTTATATGATTTCATC-AA 646
|| | |||||||||| ||||||||| || |||| ||| ||||||||| ||||||| ||
Sbjct 600 TT-GGTGCTTACATGTTCCCTCATCACAG-CAAAGCGGCATGTTATATGTTTTCATCTAA 657
Query 647 GAGGATGCAAAGCTTTAGCTGATTGGCTTCCACCTTCTCTGAGGGAATTTTCAGATGATG 706
||| ||||| | || |||||||||||||||| || |||||||||| ||| ||||| |
Sbjct 658 -AGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGGAATATTCGGATGACG 716
Query 707 AGATTGCAGCTCGCGTAGTCATTAGAGAAATATTGAGTTCACCTCCTGTCATTAGAAAGA 766
||||||||||||| ||||| ||||| ||||| ||||| || |||| ||| || | |||||
Sbjct 717 AGATTGCAGCTCGTGTAGTTATTAGTGAAATTTTGAGCTCCCCTCGTGTTATAAAAAAGA 776
Query 767 ATTCTAAAATTGCATTCATGTTTTTAACTCCCGGTACATTACCTTTCGAGAGGCTTTGGG 826
||||||||||||||| ||||| |||||||| |||||||| ||||| || | ||| ||||
Sbjct 777 GTTCTAAAATTGCATTTATGTTCTTAACTCCTGGTACATTGCCTTTTGAAAAGCTATGGG 836
Query 827 ACAGATTTTTCCAGGGCCATGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAA 886
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 837 ACCTCTTTTTCCAGGGTCATGAGGGGAAATTCTCTGTTTATATACATGCATCAAAGGATA 896
Query 887 GGCCAGTTCACTAC-AGTCGTTACTTTGTCAACCGCGAAATTCGTAGTGATGAGGTGGTG 945
|| |||||| || |||||||||||| | ||||| || ||||| ||||| ||||||||
Sbjct 897 CTCCGGTTCAC-ACCAGTCGTTACTTTCTTAACCGTGAGATTCGAAGTGACGAGGTGGTC 955
Query 946 TGGGGAAGGATATCAATGGTTGACGCAGAGAGACGGTTGTT-AGCTAATGCTCTCAGAGA 1004
||||| || ||||||||| ||||||| || ||||| ||||| | | |||||||| |||||
Sbjct 956 TGGGGTAGAATATCAATGATTGACGCTGAAAGACGTTTGTTGACC-AATGCTCTTAGAGA 1014
Query 1005 -CACTTCAAACCAGCAATTTGTTTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTG 1063
| || ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1015 TC-CTGAAAATCAGCAATTTGTATTACTCTCTGATAGTTGTGTGCCACTTCGAAGTTTTG 1073
Query 1064 AATACATTTACAATTACCTGATGCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATC 1123
||||||| ||||| || |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1074 AATACATGTACAACTATATGATGCACAGCAATGTCAGCTATGTTGACTGCTTTGATGATC 1133
Query 1124 CAGGTCAACATGGAGCAGGCAGGCATATGAATCACATGTTGCCTGAAATCCCAAAG-AAG 1182
| |||| ||||||| | |||||||||||| | ||||||||||| ||||| |||| | |||
Sbjct 1134 CTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGAAATTCCAAGGGAAG 1193
Query 1183 GATTTTCGAAAGGGTGCACAGTGGTTCACCATGAAGCGACAACACGCTGTAGCAACTATG 1242
|||||||||||||||||||||||||| | |||||||| || || ||||||| |||| ||
Sbjct 1194 -ATTTTCGAAAGGGTGCACAGTGGTTCTCTATGAAGCGTCAGCATGCTGTAGTAACTGTG 1252
Query 1243 GCAGATAGTCTTTACTACTCTAAATTTCGGGATTACTGCGGGCCAGGTATAGAGAACAAC 1302
||||||| |||||||||||||||||| ||||| ||||| ||||||||| ||||| ||||
Sbjct 1253 GCAGATAATCTTTACTACTCTAAATTCCGGGACTACTGTGGGCCAGGTGTAGAGGGCAAC 1312
Query 1303 AAGAACTGCATAGCTGATGAACACTATCTGCCAACATTCTT-TCATATGCTCGATCCCGG 1361
||||||||||| || |||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1313 AAGAACTGCATTGCGGATGAACACTATCTGCCAACATTCTTCT-ATATGCTTGATCCTAC 1371
Query 1362 TGGTATTTCTAACTGGACTGTAACACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCA- 1420
||| ||| ||||||||||||| ||| | ||||||||||||||||||||||||||||| |
Sbjct 1372 TGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAAGTGGCATCCAAG 1431
Query 1421 AAACGTATATGCCTGAGGATATCACACCCGAGTTACTAAACAACCTCACGTCTACTGACA 1480
||| || |||||||| |||||||| | ||||||| | || ||| || |||| | ||||
Sbjct 1432 AAAA-TACATGCCTGAAGATATCACGCTCGAGTTAATTAAGAACATCTCGTCCATTGACG 1490
Query 1481 CACTCGT-ACATGTCACAAGTGTTGGGATG-GGTGAAGAAATA-TGGATGCCTTGTATGT 1537
|| | | || || ||||||| | | || | || | | |||| || ||| ||||
Sbjct 1491 CAGTT-TCACGCGTAACAAGTGA-GAAAAACGGAGTAGTA-TCCTGGACGCATTGCATGT 1547
Query 1538 GGAACGGAATCAAAAGACCGTGCTA-CTTGTTTGGAAGAAAATTTCACCCGGATACACTC 1596
|||| |||||||||||||| ||||| || |||||||| |||||||| | ||||| |||
Sbjct 1548 GGAATGGAATCAAAAGACCTTGCTATCTC-TTTGGAAGGAAATTTCATGCTGATACTCTC 1606
Query 1597 GATAAACTGTTGGATCTCTTCTCAAATTACACAAG-ATC 1634
||||||||| |||| |||||| |||| |||||||| |||
Sbjct 1607 GATAAACTGATGGAACTCTTCCCAAACTACACAAGCATC 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5