BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491751
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 846 0.0
> AT4G30050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl,
sepal, flower; EXPRESSED DURING: petal differentiation and
expansion stage; Has 6 Blast hits to 6 proteins in 2 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:14687029-14687776 REVERSE LENGTH=748
Length=748
Score = 846 bits (458), Expect = 0.0
Identities = 623/698 (89%), Gaps = 29/698 (4%)
Strand=Plus/Plus
Query 1 ATTCCATATTAAAATCTTACAAGACCTCTTCCATATGAAATCTAATATGTTTCCTAACAA 60
||||| | |||||||||||||||| ||||| ||| ||||||||||| ||| |||| ||
Sbjct 52 ATTCCGTTTTAAAATCTTACAAGA--TCTTCAATACAAAATCTAATATATTT-CTAAAAA 108
Query 61 G-AAAATAAAAT-TACAAGACAAATGAAGCCCTAATTAACCTTATAAAATAAATACGCCA 118
| |||| ||||| || | | ||||||||||||||||||||||| ||| || ||||||
Sbjct 109 GAAAAAAAAAATCTA-TATATTAATGAAGCCCTAATTAACCTTATCCAAT-AAGACGCCA 166
Query 119 ACAATGTCCACTCAATTAGGAAAACTCAGCTTCTTCTTCTTCATCATCGCCTTCCTCGTC 178
| ||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 167 AAAATGTCCACTCGATTGGGAAAACTCAG--T-TTCTTCTTCATCATCGCCTTCCTCGTC 223
Query 179 TTGCTTTTTGTGGGAGCTTCAAAGGCTCGCTA--TC--T--TCACCCACTCATCACTGCT 232
||||||||||||||||||||||||||||||| || | ||| ||| |||||||||||
Sbjct 224 CTGCTTTTTGTGGGAGCTTCAAAGGCTCGCTATCTCTATCGTCAGCCAATCATCACTGCT 283
Query 233 GATCAAATCCAAATAAATCATAACCAAATTGAAGAATATGTCGACCCAACCGACGAGAAT 292
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 284 GATCAAATCCAAATAAATCATAACCAAATTGAAGAATATGTCGAGCCAACCAACGAGAAT 343
Query 293 ACCAAATCAGCAGCATATTATGTTGACCTAATCAATGAGAATGCCAAATCTGCATACCAT 352
| ||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 344 GCTAAATCAGCAGCGTATTATGTTGACCTAATCAATCAGAATACCAAATCCGCATACCAT 403
Query 353 GCTTACTTGCATACTAAGCGTCTAAACATATTCGGAATCGAATGGCTATGGAGGATTGAT 412
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 404 GCTTACTTGCATACTAAGCGTCTAAACATATTCGGCACCGAATGGCTATGGAGGATTGAT 463
Query 413 GTCcttttccttcttctttgtttatctttgttcgttaccgatttatcttttagggttttc 472
|| ||| |||||||||||||||| ||||| || |||||||||||||||| ||||||||||
Sbjct 464 GTACTTCTCCTTCTTCTTTGTTTGTCTTTCTTTGTTACCGATTTATCTTCTAGGGTTTTC 523
Query 473 ttttGCATCGCAGGCAGATGTTCTGCTAAGTTTTCAAAATCTATATGAT-C--G---T-- 524
|||||||||||| ||||||||||||||||| |||||||||||||||||| | | |
Sbjct 524 TTTTGCATCGCAAGCAGATGTTCTGCTAAGGTTTCAAAATCTATATGATACTTGAGATCG 583
Query 525 TT-GTTATTGttttttttGGATTATTCATTCAACGTTGTTCCAAGtttttttACTTATGA 583
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 584 TTTGTTATCGTTTTTTT-GGATTATTCATTCAACGTTGTTCCAAGCATTTTTACTTATGA 642
Query 584 TTCTTGCTACATTATTTCTTTGAAACTATCGTACTCATGTCCAAGTAACAATGAAAATGT 643
||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 643 TTCGTGCTACATCATTTCTTTGAAACTATCGAACT---GTCCAAGTAACAATGAAAATGT 699
Query 644 AACTACTAACAATTGTATCTTATTTTCACGCAATCAAG 681
|||||||||||||||||||||||||||| |||||||||
Sbjct 700 AACTACTAACAATTGTATCTTATTTTCAGGCAATCAAG 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5