BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491753
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30030.1 | Symbols: | Eukaryotic aspartyl protease family p... 1740 0.0
> AT4G30030.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr4:14682210-14683484 REVERSE LENGTH=1275
Length=1275
Score = 1740 bits (942), Expect = 0.0
Identities = 1198/1314 (91%), Gaps = 48/1314 (4%)
Strand=Plus/Plus
Query 1 ATGGCCAT--CTCT-CTAACATTACATATTCGTCCCGCCCTTCTTATCATTCTATTCGCT 57
|||||||| |||| ||| |||||| ||||||| || |||||||||||||| ||||||||
Sbjct 1 ATGGCCATCACTCTACTACCATTACGTATTCGTGCCTCCCTTCTTATCATTATATTCGCT 60
Query 58 CTCA-TGTGCCCAAACCAATGCACCTCGTATCGATTTACGCTAAGGCTACACACAAAATC 116
|||| | || |||| ||||||||||| | | || | | | || || | ||
Sbjct 61 CTCACT-TGTTCAAAGGAATGCACCTCG---C-A-TT-C-C--CGACT-TACGC-TAA-G 107
Query 117 AATCAAAACCAAAGAATCACCAAAAAT-AAAACCTGGTTACTTGCATTCCAAGTCAACCC 175
|| ||||||| |||||||| | ||||| |||| | |||||||||||||||||||||| ||
Sbjct 108 AACCAAAACCCAAGAATCATCGAAAATCAAAATC-GGTTACTTGCATTCCAAGTCAA-CC 165
Query 176 CCGCGCCTTCTCGCCTAGATAACTTGTGGACCACGGAAATAGCGGATATCGTCTCACATG 235
|| || ||||||||||||||||||||| || | | |||||||||||
Sbjct 166 CC-CG-CTTCTCGCCTAGATAACTTGT-------GG----A-C------CGTCTCACATG 205
Query 236 TCACTCCTATTCCGAATCCAGCAGCATTCCTTGCAAATATTTCTATCGGCGATCCACCGG 295
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 206 TCACTCCTATTCCGAATCCAGCAGCATTCCTTGCAAATATTTCTATCGGCAATCCACCTG 265
Query 296 TCCCACAACTCTTACTCATAGACACAGGTAGTGACCTAACTTGGATCCAGTGTCTCCCCT 355
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 266 TCCCGCAACTCTTACTCATAGATACAGGTAGTGACCTAACTTGGATCCATTGTCTTCCCT 325
Query 356 GCAAATGTTACCCTCAAACAATCCCTTTTTTCCACCCTTCAAGATCTTCCACTTACCGTA 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 326 GCAAATGTTACCCTCAAACAATCCCTTTTTTCCACCCTTCAAGATCTTCCACTTACCGAA 385
Query 416 ACGCTTCCTGTGAATCCGCACCACATGCCATGCCCCAAATCTTTCGCGACGAAAAGACTG 475
||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 386 ACGCTTCTTGTGTATCCGCACCACACGCCATGCCCCAAATCTTTCGCGACGAAAAGACTG 445
Query 476 GAAACTGCCGATATCACCTACGCTACCGTGACTTTTCTAACACAAGAGGCATTTTAGCTA 535
||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 446 GAAACTGCCAATATCACCTACGCTACCGCGACTTTTCTAACACCAGAGGCATTTTAGCTG 505
Query 536 AAGAAAAACTCACATTTCAAACATCTGACGAGGGCTTAATCTCTAAACCAAACATTGTTT 595
| ||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||
Sbjct 506 AGGAAAAACTCACATTTGAAACATCTGACGACGGTTTAATCTCTAAACAAAACATTGTTT 565
Query 596 TCGGTTGCGGACAAGACAACTCCGGTTTCACTC-AATACAGCGGCGTGCTCGGTTTAGGT 654
|||| ||||||||||| |||||||||||||| | |||| |||||||||||||||||||||
Sbjct 566 TCGGATGCGGACAAGATAACTCCGGTTTCAC-CAAATATAGCGGCGTGCTCGGTTTAGGT 624
Query 655 CCTGGTACATTCTCCATAGTAACCCGCAATTTCGGCTCTAAATTCTCATACTGCTTCGGC 714
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 625 CCAGGTACATTCTCCATAGTAACCCGCAATTTCGGCTCTAAGTTCTCGTACTGCTTCGGC 684
Query 715 AGCCTTATCGATCCGACTTACCCTCACAAC-TTCCTAATCCTCGGAAACGGCGCCAGAAT 773
||||| | | |||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 685 AGCCTAACCAATCCGACTTACCCTCACAACATT-CTAATCCTCGGAAACGGCGCCAAAAT 743
Query 774 CGAAGGCGATCCAACACCTTTACAAATATTCCAAGACCGTTACTACCTTGACCTGCAAGC 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 744 CGAAGGCGATCCAACACCTTTACAAATATTCCAAGACCGTTACTACCTTGACCTCCAAGC 803
Query 834 AATCT-CTTTAGGAGAGAAACTTCTTGATATCGAACCCGGAATC-TTCCAGAGATATAGG 891
||||| |||| |||||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 804 AATCTCCTTT-GGAGAGAAACTTCTCGATATCGAACCCGGAA-CTTTCCAGAGATATCGG 861
Query 892 TCCAAAGGAGGAACAGTCATCGACACGGGCTGTTCACCAACGATTCTAGCCAGAGAAGCT 951
||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 862 TCCCAAGGAGGCACGGTCATCGACACAGGCTGTTCTCCAACGATTCTAGCCAGAGAAGCT 921
Query 952 TATGAAACTCTCTCTGAAGAAATCGATTTTCTTCTTGGAGAAGTTCTCAGACGCGTTAAA 1011
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 922 TACGAAACTCTCTCTGAAGAAATTGATTTTCTTCTAGGAGAAGTTCTCAGACGCGTTAAA 981
Query 1012 GATTGGGAGCAATACACGAATCATTGCTACGAAGGGAATCTTAAACTTGATCTCTACGGC 1071
|||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 982 GATTGGGATCAATACACGACTCCTTGCTACGAAGGGAATCTTAAACTTGATCTCTACGGC 1041
Query 1072 TTTCCCGTCGTCACGTTCCATTTCGCCGGCGGCGCTGAGCTGGCGTTAGACGTTGAGAGT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TTTCCCGTCGTCACGTTCCATTTCGCCGGCGGCGCTGAGCTGGCGTTAGACGTTGAGAGT 1101
Query 1132 TTGTTCGTTAGCAGTGAAAGTGGAGATAGCTTTTGCTTGGCTATGACTATGAACACGTTT 1191
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TTGTTCGTTAGTAGTGAAAGTGGAGATAGCTTTTGCTTGGCTATGACTATGAACACGTTT 1161
Query 1192 GATGATATGAGCGTTATTGGTGCCATGGCTCAGCAGAATTATAATGTTGGTTATAATCTT 1251
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1162 GATGATATGAGCGTTATTGGTGCCATGGCTCAGCAGAATTATAATGTTGGCTATAATCTT 1221
Query 1252 CGAACAATGAAGGTTTATTTCCAGAGGACTGATTGTGAGATTCTTGATTCTTAA 1305
||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1222 CGAACCATGAAGGTTTATTTCCAGAGAACTGATTGTGAGATTATTGATTCTTAA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5