BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491755
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1064 0.0
> AT4G30010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast
hits to 39 proteins in 18 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:14672832-14674144
FORWARD LENGTH=671
Length=671
Score = 1064 bits (576), Expect = 0.0
Identities = 647/679 (95%), Gaps = 13/679 (2%)
Strand=Plus/Plus
Query 1 ATCTTCGAAAAGTCTCATTTCTCGATCCCCAATTCGTGGATTAGGGTTAAAAGGAACCAT 60
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATCTTCGGAAAGTCTCATTTCTCGATCCCCAATTCGTGGATTAGGGTTAAAA-GAACCAT 59
Query 61 TTTTATTCTCGTCGCCAAAAACAACAAATCTCAGATCGAAGAAGGAAGAAGAGATCGAAA 120
|||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 60 TTTTATTCTCGTCG-C-GCAACAACAAATC-CAGATCGAAAAAGGAAGAAGAGATCGAAA 116
Query 121 TGGCGTTGAGAAGGGTTTACAGTGAAATCAAAGGGAAGAAGGTGACGGAGCTTCCAGGCT 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 TGGCGTTGAGAAGGGTTTACAGTGAAATCAGAGGGAAGAAGGTGACGGAGCTTCCAGGCT 176
Query 181 ATTTGAAATCGACGTTTTCAATGGAGACCGTGAAGACATCTGTGAAGAGAGGACTCGATA 240
|| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 ATATCAAATCGACTTTTTCAATGGAGACCGTGAAGACCTCTGTGAAGAGAGGACTCGATA 236
Query 241 ACTACAACGAAAAATACATTCAGACCAGCTCCGTTGACCCTATCCTTCATATCTGCTTCT 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 ACTACAACGAAAAATACATTCAGACCAGCTCCGTTGATCCTATCCTTCATATCTGCTTCT 296
Query 301 ACGGCATGGCTTTCTCTTACCTTGTCGCTCTCCCTAATGAGCGTCGTCATCTTGAGCATC 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 297 ACGGCATGGCTTTCTCTTACCTTGTCGCTCTCCCTAATGAGCGTCGCCATCTTGAGCATC 356
Query 361 AGCAGCATGCTAAGGAGCACGGTGGTCATTGATCTCGTCGGAATCGTTTCGATCTCGAGA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 AGCAGCATGCTAAGGAGCACGGTGGTCATTGATCTCGTGGGAATCGTTTCGATCTCGAGA 416
Query 421 TGATTTTAGGGGGGTTGCTGTGAAATCTTTCT--GCTTGATGGTGACGA--A-TCAAGAA 475
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 417 TGATTTTAGGGGGGTTGCTGTGAAATCTTTCTCTGCTTGATGGTGACGACGACTCAAGAA 476
Query 476 TTGTGTCTTATTGTTTTGTTTTCTTGAATTTTCCTGGATATTGTTGACCTAAAGGAAAAC 535
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 477 TTGTGTCTTATTGTTTCGTTTTCTTGAATTTTCCTGGATAATGTTGACCTAAAGGAAAAC 536
Query 536 CTTTCTTTTGAATTGCACTCCATGATAGTCAATAATTGAAGCATCATGATGATATCCATG 595
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTTTCTTTCGAATTACACTCCATGATAGTCAATAATTGAAGCATCATGATGATATCCATG 596
Query 596 AATAATGAAACCTGttttttttttGTTCCATGAAGTTGTGAATTCACCATTTGTTTTATC 655
||||||||||| | |||||||| ||||| |||||||||||||||| || ||||||||||
Sbjct 597 AATAATGAAAC-T-TTTTTTTT--GTTCCGTGAAGTTGTGAATTCAGCAATTGTTTTATC 652
Query 656 ATATTTGATCGATTCAATG 674
|||||||||||||||||||
Sbjct 653 ATATTTGATCGATTCAATG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5