BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491757

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29980.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   841    0.0  


> AT4G29980.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, 
seed; EXPRESSED DURING: petal differentiation and expansion 
stage, E expanded cotyledon stage; BEST Arabidopsis thaliana 
protein match is: Fasciclin-like arabinogalactan family protein 
(TAIR:AT1G30800.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:14664954-14665583 
REVERSE LENGTH=630
Length=630

 Score =  841 bits (455),  Expect = 0.0
 Identities = 503/526 (96%), Gaps = 3/526 (1%)
 Strand=Plus/Plus

Query  1    TCTTCCATGGCAACCACCAAACAcctcctcctcctcttcctcctcatcctcACTATGATC  60
            |||||||||||||||||||| ||   |||||||||||||||||||||| || |||| |||
Sbjct  32   TCTTCCATGGCAACCACCAAGCA---CCTCCTCCTCTTCCTCCTCATCATCGCTATCATC  88

Query  61   ACCATTACATCCTCCACTTCGCTTCCATTTCTCACGACGGAGCAAAACCAAATCGCAACC  120
            ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  89   ACCATTACATCTTCCACTTCACTTCCATTTCTCACGACGGAGCAAAACCAAATCGCAACC  148

Query  121  AAAATCATAGACGCAATGATCTCAAGCGGCTCTTTCGAAGATTGGAGCGGAGCGTTCCTC  180
            |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  149  AAAATCATAGACGCAATGGTCTCAAGTGGCTCTTTCGAAGATTGGAGCGGAGCGTTCCTC  208

Query  181  AACAACAACGACGAATTAAACGGTCCAGTCCTCACTTCAACTCTCTTCCTCCCCAAAACA  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  209  AACAACAACGACGAATTAAACGGTCCAGTCCTAACTTCAACTCTCTTCCTCCCCAAAACA  268

Query  241  TCCGTAGAAGGAATCAACGCCACGTCACCACTCGTTGCTTCTTACCACATTGTTCCACAA  300
            ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  269  TCCGTGGAAGGAATCAACGCCACGTCACCACTAGTTGCTTCTTACCATATTGTTCCACAA  328

Query  301  TGGCTTGACTTCTCCGTCATAAGTCTCATGATGCCTTTCTCTCGCATTCCTACACTTCTC  360
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  329  TGGCTTGACTTCTCCGTCATAAGTCTCATGATGCCTTTCTCTCGCATCCCTACACTCCTC  388

Query  361  TCTGGACACTCTATAGTCGTTACCAATAATTCAGCTTCTGGTTTTACTCTTGATGGCGTT  420
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  389  TCTGGACACTCTATAGTCGTTACCAACAATTCAGCTTCTGGTTTTACTCTTGATGGTGTT  448

Query  421  CTCATCTCTGAGCCAGATTTATTCGTCTCTCCTTCCATAGTTATCCATCGAATGGCTTTT  480
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  449  CTCATCTCTGAGCCAGATTTATTCGTCTCTCCTACTATAGTTATCCATCGAATGGCTTTT  508

Query  481  CCATTTAACTTCTCTCGTTACGGTGGTGGCCATATATAGTTAGTTA  526
            |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  509  CCATTTAACTTCTCTCGTTACGGTGGTGGCGATATATAGTTATTTA  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5