BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491758
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1677 0.0
> AT4G29960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14660567-14662403
REVERSE LENGTH=1191
Length=1191
Score = 1677 bits (908), Expect = 0.0
Identities = 1105/1192 (93%), Gaps = 45/1192 (4%)
Strand=Plus/Plus
Query 1 AAAAATTCACCTCCTAAGaaaaaaaTTATCAGACTCTC------AGAAAAAAC---GGAG 51
|||| ||||||||| |||||||||||||||||||| || ||||||||| ||||
Sbjct 3 AAAATTTCACCTCCAAAGAAAAAAATTATCAGACTTTCAGAAGAAGAAAAAACGAAGGAG 62
Query 52 AAGAAGAACAATTTCGCGGATTCAAGAGACAGAGAG-------AGCGTAAAGTTTGACCC 104
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 63 AAGAAGAACAATTTCGCGGATTCAAGAGACAGAGAGCTTCTTCTGCGTAAAGTTTGATCC 122
Query 105 TTTGAAAATGGCTGAAGAACCAGAGAAGGTG------TC-----T---T----CTTCTGG 146
|||||||||| | |||||||||||||||||| || | | |||||||
Sbjct 123 TTTGAAAATGACGGAAGAACCAGAGAAGGTGTCTTCTTCAGTATTACATCAACCTTCTGG 182
Query 147 TGATAAGAAACCTGAAGATGTTGGGATCAAACCTCAGGATCCAGCGTCTTCTTCTGGGTT 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGATAAGAAACCTGAAGATGTTGGGATCAAACCTCAGGATCCAGCGTCTTCTTCTGGGTT 242
Query 207 TCGAGCTTATCCTAATGGTGATTCTCCAATGTATCCGGTTTTTTATCCGGGTCTTGTTCC 266
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 243 TCGAGCTTATCCTAATGGTGATTCTCCAATGTACCCGGTTTTTTATCCGGGTCTTGTTCC 302
Query 267 CGGATCGAATCCTGTACCGTACGAGGAACAAATGAACCGTGGAGCTGGGATCTATGCGGT 326
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CGGATCCAATCCTGTACAGTACGAGGAACAAATGAACCGTGGAGCTGGGATCTATGCGGT 362
Query 327 TCCTGTGCATCAATTTGGTGGACATGTCGCTGGTCTTCCCTCAAATTATCTTATTCCTCT 386
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 363 TCCTGTTCATCAATTTGGAGGACATGTCGCTGGTCTTCCCTCAAATTATCTTATCCCTCT 422
Query 387 CACTTACAATGTTCCAACTACTAGACCAAATAATGAGGCTGAGACTGGGGGAGAGAATCA 446
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 423 CACTTACAATGTTCCAACGACTAGACCAAATAATGAAGCTGAGACTGGGGGAGAGAATCA 482
Query 447 AGCGCAAGCTGGGCAGGGTCAGCAGCAGCAGCAACCTGCAAATCAAAGGCATGTCGTGGA 506
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 483 AGCGCAAGCTGGGCAGGGTCAGCAGCAGCAGCTACCTGCAAATCAAAGGCATGTTGTGGA 542
Query 507 AAGGAGATTTCAGATCGCGTTTCAGCTTGATTTGTTCCTCATACTCAAGCTTGCTGCTGT 566
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 AAGGAGATTTCAGATCGCGTTTCAGCTTGATTTGTTTCTCATACTCAAGCTTGCTGCTGT 602
Query 567 TATCTTTTTGTTCAACCAAGATGGATCAAGGCAAAGGCTCGCTGTGCTTGTGATTTTCGC 626
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 603 TATCTTTTTGTTCAACCAAGATGGATCAAGACAAAGGCTTGCTGTTCTTGTGATTTTCGC 662
Query 627 TACCATAATTTACTTATACCAAACTGGAGCTCTTGCACCGTTTGTGCGATGGCTCTCACA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TACCATAATTTACTTATACCAAACTGGAGCTCTTGCACCGTTTGTGCGATGGCTCTCACA 722
Query 687 AGGTATGCATAGAGCAGCAGTACCACCACCTCGACCACATAGACCTGCTGCGAGAGCTGA 746
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 723 AGGTATGCATAGAGCAGCAGTACCACCTGCTCGACCACATAGACCTGCTGTTAGAGCTGA 782
Query 747 TAATGATGCTGCAGCTGCAGTTCCACTAAACGAAAATGCAGTTCCCGAGGGACAAGAGAA 806
||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 783 TAATGATCCCGCAGCTGCAGTTCCACTAAACGAAAATGCTGTTCTCGAGGGAGAAGAGAA 842
Query 807 TGAAGGTGATAATGGTAACCGAGCAA-A-----TGCAAATGAAAATGAAAACGTCGACGC 860
||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 843 TGAAGCTGATAACGGTAACCGAGCAAGAGCAAATGCAAATGAAAATGAAAACGTTGACGC 902
Query 861 AGGAAACCAAGGGAATCAATGGTGGGGGATAGTGAAAGAGATTCAGATGATAGTGTTCGG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AGGAAACCAAGGGAATCAATGGTGGGGGATAGTGAAAGAGATTCAGATGATAGTGTTCGG 962
Query 921 CTTTATAACTTCACTACTCCCTGGTTTTCACAACATAGAGTAGAAGTAGACTCTTTTTCT 980
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 CTTCATAACTTCATTACTCCCTGGTTTTCACAACATAGAGTAGAAGTAGACTCTTTT-CT 1021
Query 981 GCATACTTTCATCTTCTTCAACTCaaaaaaaGAAGTGTTGTGTTCTACTTT-AGTCTTCT 1039
||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1022 GCATACTTTCATCTTCTGCAACTCAAAAAAAG---TGTTGTGTTCTACTTTTAGTCTCCT 1078
Query 1040 TCGATCTAAAGTGCAAGTACAGAAAATTTTACCCTTCAGACTCCAAAACTTAATGTATGT 1099
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCGATCTAATGTGTAAGTACAGAAAATTTTACCCTTCAGACTCCAAAACTTAATGTATGT 1138
Query 1100 GAGCAGCAATCTTTATGCTTTTGCCTCTAATGTTCAAAGCAGAGGAACTCAG 1151
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 GAGCCGCAATTTTTATGCTTTTGCCTCTAATGTTCAAAGCAGAGGATCTCAG 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5