BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491763
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1149 0.0
> AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644009-14645505 FORWARD
LENGTH=891
Length=891
Score = 1149 bits (622), Expect = 0.0
Identities = 733/785 (93%), Gaps = 13/785 (2%)
Strand=Plus/Plus
Query 1 AGTACACTCAATagaaagacac--agaaagaaagaaaggaccaacaaaaaacaaaacaaa 58
|||||||||||||||||||||| |||||||||||||||| ||| | | || | ||||||
Sbjct 1 AGTACACTCAATAGAAAGACACAAAGAAAGAAAGAAAGGA-CAA-ACAGAA-ATAACAAA 57
Query 59 acCTTCCATTTCAAGAAAGCATCGTCTTTGTGTGTCCGAAAAATGGATGATCTAGACCAT 118
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 58 ACCTTCCATTTCAAGAAAGCATCATCTTTGTGTGTCCGAAAAATGGAAGATCTCGACCAT 117
Query 119 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAAAATCAAGAACTCGAATTTGAC 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 GAGTACAAGAATTACTGGGAAACCACAATGTTCTTCCAGAATCAAGAACTCGAATTTGAC 177
Query 179 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGACTCGAGTTCGCCTGACGGAGCA 238
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 178 AGTTGGCCGATGGAGGAAGCGTTTTCGGGTTCCGGCGAGTCGAGTTCGCCAGACGGAGCG 237
Query 239 GCAACGTCGCCAGCATCTTCGAAAAACGTTGTATCTGAGAGAAACAGACGACAAAAGCTT 298
||||||||||| || |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 238 GCAACGTCGCCGGCTTCTTCGAAGAACGTTGTCTCCGAGAGAAACAGACGGCAAAAGCTT 297
Query 299 AATCAGAGACTTTTTGCTCTCCGATCAGTCGTTCCCAATATAAGCAAGTTGGACAAGGCA 358
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 298 AATCAGAGACTTTTTGCTCTCCGGTCAGTTGTTCCCAATATAAGCAAGTTGGACAAGGCA 357
Query 359 TCTGTCATCAAAGATTCAATCGACTACATGCAAGAGCTTATTGATCAAGAGAAGAGGCTA 418
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||
Sbjct 358 TCTGTCATCAAAGATTCTATCGACTATATGCAAGAACTTATTGATCAAGAGAAGACTCTA 417
Query 419 GAAGCAGAGATCAGAGAGCTAGAATCACGATCATTATTGCTAGAAAATCCGATAAGAGAT 478
||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 418 GAAGCAGAGATCAGAGAGCTAGAATCACGGTCAACATTGCTAGAAAATCCGGTAAGAGAT 477
Query 479 TACGATTGCGCCAATAATTTTGCTGAAAATCAGCTGCAAGATTTCTCAGACAATAATGGC 538
||||||| | | |||||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct 478 TACGATT--G-C---AATTTTGCGGAAACTCATCTGCAAGATTTCTCAGACAATAATGAC 531
Query 539 CTGAGATCAAAAAAGTTCAAGCATATGGATTACGA-TACTAGAGTACAACACTACCCCAT 597
|||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 532 ATGAGATCAAAAAAGTTTAAGCAGATGGATTAC-AGTACTAGAGTACAACACTACCCCAT 590
Query 598 TGAAGTTCTCGAAATGAAGGTGACATGGATGGGAGAGAAGACAGTAGTGGTATGCATAAC 657
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 591 TGAAGTTCTCGAAATGAAAGTGACATGGATGGGAGAGAAGACGGTAGTGGTATGCATAAC 650
Query 658 ATGTAGCAAGAAAAGAGAAACAATGTTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 717
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 ATGTAGCAAGAAAAGAGAGACAATGGTGCAGCTTTGTAAAGTGTTGGAGTCTTTGAATCT 710
Query 718 CAACATTCTCACTACTAACTTCTCTTCCTTCACCTCTCGTCTCTCCACCACTCTCTTCCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 CAACATTCTCACTACTAACTTCTCTTCCTTCACCTCTCGTCTCTCCACCACCCTCTTCCT 770
Query 778 CCAGG 782
|||||
Sbjct 771 CCAGG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5