BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491771
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29870.1 | Symbols: | Oligosaccharyltransferase complex/mag... 848 0.0
> AT4G29870.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr4:14606001-14606674
FORWARD LENGTH=674
Length=674
Score = 848 bits (459), Expect = 0.0
Identities = 607/673 (90%), Gaps = 32/673 (5%)
Strand=Plus/Plus
Query 1 ATCCGACGAAAATGGCACCGAGATCCGATTCACAAACCCTAGCCACTGGCTCCGTCACAT 60
|||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1 ATCCGACGAAAATGGCTCCGAGATCAGATTCACAAACCCTAGCCACCGGCTCCG--AC-G 57
Query 61 CCGATGAATCCTCAATCGATCCGATCTTCCACATTCTCCGTACCATCCCTTTCTCCTTTC 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 58 AAAATGAATCCTCAATCGATCCGATCTTCCACATTCTCCGTATCATCCCTTTCTCCTTCC 117
Query 121 TCCGACCACCGCGTCTCCGTCTCAAGCTCCCTTCCTTCACACTCCCATCTCCAATGACTG 180
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 118 TCCGACCACCACGTCTTCGTCTCAAGCTCCCTTCCTTCACTCTCCCATCTCCAATGACTG 177
Query 181 TCTTCTCTTTGATTCTCCTCACTTACTTCCTCGTCGTCTCCGGCTTCGTCTACGACGTGA 240
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 TCTTCTCACTGATTCTCCTCACTTACTTCCTCGTCGTCTCCGGTTTCGTCTACGACGTGA 237
Query 241 TTGTCGAGCCTCCAGGTATCGGATCGACTCAAGACCCAATCACCGGGTCAGTACGACCCG 300
|||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||
Sbjct 238 TTGTCGAGCCTCCAGGTATCGGATCGACACAGGATCCAATCACCGGGTCAGTAAGACCCG 297
Query 301 TAGTGTTCATGTCGGGTCGGGTCAATGGTCAATACATCATAGAAGGTCTTTCTTCGGGAT 360
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 298 TCGTGTTTATGTCGGGTCGGGTCAATGGTCAATACATCATTGAAGGTCTTTCTTCCGGAT 357
Query 361 TCATGTTCGTGCTCGGTGGGATTGGGATCATAATGTTGGATCTGGCATTGGATAAGAATC 420
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 TCATGTTCGTACTCGGTGGGATTGGAATCATAATGTTGGATCTGGCATTGGATAAGAATC 417
Query 421 GAGCTAAGAGTGTTAAAGCATCTTATGCTACAGCTGGAATCTCCTCCATTGTGATTGCTT 480
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 418 GAGCTAAGAGTGTTAAAGCATCTTATGCAACAGCTGGAGTCTCCTCCATTGTGATTGCTT 477
Query 481 ATGTTATGAGTATGCTCTTCATTCGTATTAAGATCCCTGGTTATCTCCATTAGAGG-TT- 538
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 478 ATGTTATGAGTATGCTCTTCATTCGCATTAAGATCCCTGGTTATCTCCGTTAGAGGGTTA 537
Query 539 --T-A-----G-----A-T---GTAATTGGATCTTTAGTTTTAAGATCGATCACTAGAAA 581
| | | | | ||||||||||||||||| | ||||||||||| ||||||
Sbjct 538 GATCACTTTTGGCTTCAATTCTGTAATTGGATCTTTAGTAT-AAGATCGATCATTAGAAA 596
Query 582 GaaaaaaaaTGTGACCtttt-tttGTGTGTGTTTTCTAA-GCTTATGTGTTTCTTGTTTG 639
||| |||||| |||| ||| ||| ||||| |||| ||||||||||||||||||||
Sbjct 597 -AAA-----TGTGACTTTTTGTTT-TGTTTGTTTGCTAAAGCTTATGTGTTTCTTGTTTG 649
Query 640 ATAATGAGAATTT 652
|||||||||||||
Sbjct 650 ATAATGAGAATTT 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5