BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491772
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29860.1 | Symbols: EMB2757, TAN | Transducin/WD40 repeat-li... 2065 0.0
AT4G29850.1 | Symbols: | Eukaryotic protein of unknown functio... 601 9e-171
> AT4G29860.1 | Symbols: EMB2757, TAN | Transducin/WD40 repeat-like
superfamily protein | chr4:14601698-14605796 REVERSE LENGTH=2011
Length=2011
Score = 2065 bits (1118), Expect = 0.0
Identities = 1243/1304 (95%), Gaps = 6/1304 (0%)
Strand=Plus/Plus
Query 1 CTTGGTTTCTCTATTACAAGAGTTTTGGTTTTGTGTAGAAGCTAAATCAGAGATGAGTAA 60
|||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||
Sbjct 42 CTTGGTTTCTCTATTACAAGAG-TTTGGTTTTGTGTAGTAGTTGAATCAGAGATGAGTAA 100
Query 61 GAGACCTCCGCCTGATCCGGTTGCTGTGCTTAGAGGACACCGTCACTCTGTTATGGACGT 120
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct 101 GAGACCTCCGCCTGATCCAGTGGCTGTGCTTAGAGGGCACCGTCACTCTGTTATGGATGT 160
Query 121 TTCGTTTCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGAT 180
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TTCCTTCCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGAT 220
Query 181 TTGGGATACAATTCAGCATCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGG 240
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TTGGGATACTATTCAGCACCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGG 280
Query 241 GGTTTTAGCTGTAGCAGCTAGTCCATGGTTAGGAGAGAACAAGATTATCAGCCAGGGAAG 300
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 281 GGTTTTAGCTGTAGCAGCTAGTCCCTGGTTAGGAGAGGACAAGATTATCAGCCAGGGAAG 340
Query 301 AGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGATCCATTACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 341 AGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGACCCATTACT 400
Query 361 AATACTTGAGACAAGCGCCTATCATTTTTGCAAGTTCTCTCTGGTTAAGAAGCCTAAGAC 420
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 401 AATACTTGAGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAA 460
Query 421 TTCTCTGCAAGAAGCTGTAAGTCACTTACAGAATTGTGATGAGCAGGATGATGGAGACAC 480
||||||||||||||||| |||||||| || | ||||||||||||||||| |||||||||
Sbjct 461 TTCTCTGCAAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACAC 520
Query 481 GCGTAGTGTTCAACTTGGAGATGATAGTGAACGATCCGTGGAGGATTCTGGTTTGCTTCA 540
||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 521 ATGTAATGTTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCA 580
Query 541 GCATGGAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGA 600
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GGATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGA 640
Query 601 GGTAGAGATATGGGATATCAATACCGGAGACAAGATCATACAGCTTCCTCAAAGTAGCCC 660
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 GGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAGCTTCCTCAAAGTAGCCC 700
Query 661 TGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGTATGTGTATGGCTGTTCAATTGTT 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 701 TGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGAATGTGTATGGCTGTTCAATTGTT 760
Query 721 TTGCCCTCCTGAATCACAGGGTTTCTTACATGTCCTAGCTGGTTATGAGGATGGTTCAAT 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 761 TTGCCCTCCTGAATCACAGGGTTTCTTACATGTCTTAGCTGGTTATGAGGATGGTTCAAT 820
Query 781 ACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGA 880
Query 841 GCCAGTTTTAAGTCTAAGTGTTGCATCATCATGTGATGGAGGTATCTCAGGAGGGGCAGA 900
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 881 GCCAGTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGA 940
Query 901 TGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATGAGGAAAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 941 TGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATAAGGAAAGA 1000
Query 961 GATTACTTTGGAAAGGCCCGGTGTATCGGGGACCTCAATTCGACCCGATGGCAAAATTGC 1020
|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 1001 GATTACTTTGGAAAGGCCCGGTGTATCGGGCACCTCAATTCGAGTCGATGGGAAAATTGC 1060
Query 1021 AGCAACGGCTGGTTGGGACCACAGAATAAGGGTCTATAATTACCGCAAAGGAAATGCTCT 1080
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1061 AGCCACGGCTGGTTGGGACCACAGAATACGAGTCTATAATTACCGCAAAGGAAATGCTCT 1120
Query 1081 AGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGA 1180
Query 1141 GCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTCTATCCTCCCCA 1200
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1181 GCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTATATCCTCCCCA 1240
Query 1201 TAAATCTCAATGATCTTCTATATGGTTCGGTTTTGGTTTGATTTCTTGACCTGAATCCCT 1260
|||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1241 TAAATCTCTCTGATCTT-TAT--GGTTCGGTTTTGGTTTGATTTCTTGACCTGAATCTCT 1297
Query 1261 TGAATTTGTAAATA--CATTATGTCATCATCAAAAGAACAAATG 1302
|||||| ||||||| ||| ||||||||||||||| ||||||||
Sbjct 1298 TGAATTGGTAAATATACATGATGTCATCATCAAAAAAACAAATG 1341
Score = 828 bits (448), Expect = 0.0
Identities = 526/561 (94%), Gaps = 16/561 (3%)
Strand=Plus/Plus
Query 1313 TTGATTTGTTCAAACTCGCACGTTCTGCCGTTTTCCTAGAAAAGAAAAATCAAACGACGC 1372
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1392 TTGATTTGTTCAAACTCGCACGTTCTGCCGTTTTCGGAGAAAAGAATAATCAAACGACGC 1451
Query 1373 GTAGTTTGCATCACCGTACGTTGAGTAGATTTCACGACCAAAAG-AA----A-TTGCACC 1426
|||||||| |||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 1452 GTAGTTTGAATCATAGTACGTTGAGTAGATTTCACGACCAAAAGAAATTGCATTTGCACC 1511
Query 1427 AAACTAATCCGTCACCGTCGCAGGAGACTCATAAACATCTGAAGACCTAAAA-TCAAACA 1485
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1512 AAACTAATCCGTCACCGTCGTAGGAGACTCAT-AACATCTGAAGACCTAAAATTCAAAC- 1569
Query 1486 AGCTGTGT-AAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGA 1544
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 A-CTGTGTAAAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGA 1628
Query 1545 TTGAGACTTCTTACACAGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGG 1604
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTGAGACTTCATACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGG 1688
Query 1605 CTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGCTTCTTCATGGCTTATAATCTAG 1664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1689 CTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAG 1748
Query 1665 TTGGCGGTGATCGAGGCCACGGTATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCAT-C 1723
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1749 TTGGCGGTGATCGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTC 1808
Query 1724 CCTGGGTTTTACTATACACGGATCGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCC 1783
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1809 CC-GGGTTTTACTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCC 1867
Query 1784 TTCTCAAACATACCGCCCGTTTAGCC-TCGCCTTTCGAACCTCTCCTACTCAA--TGTAT 1840
|||||||||||||||||||||||| || ||||| ||| ||||||||||||| |||||
Sbjct 1868 TTCTCAAACATACCGCCCGTTTAGGTGTCCCCTTTTGAATCTCTCCTACTCAAAATGTAT 1927
Query 1841 AGAGATGTTTTATTGCTCTAT 1861
|||||||||||||| ||||||
Sbjct 1928 AGAGATGTTTTATTACTCTAT 1948
> AT4G29850.1 | Symbols: | Eukaryotic protein of unknown function
(DUF872) | chr4:14601621-14603011 REVERSE LENGTH=646
Length=646
Score = 601 bits (325), Expect = 9e-171
Identities = 364/382 (95%), Gaps = 6/382 (2%)
Strand=Plus/Plus
Query 1485 AAGCTGTGT-AAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATG 1543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AAGCTGTGTAAAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATG 185
Query 1544 ATTGAGACTTCTTACACAGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTG 1603
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ATTGAGACTTCATACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTG 245
Query 1604 GCTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGCTTCTTCATGGCTTATAATCTA 1663
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 246 GCTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGA 305
Query 1664 GTTGGCGGTGATCGAGGCCACGGTATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCAT- 1722
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 306 GTTGGCGGTGATCGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATT 365
Query 1723 CCCTGGGTTTTACTATACACGGATCGCGTATTATGCTTACAAAGGATACAAAGGTTTCTC 1782
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 366 CCC-GGGTTTTACTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTC 424
Query 1783 CTTCTCAAACATACCGCCCGTTTAGCC-TCGCCTTTCGAACCTCTCCTACTCAA--TGTA 1839
||||||||||||||||||||||||| || ||||| ||| ||||||||||||| ||||
Sbjct 425 CTTCTCAAACATACCGCCCGTTTAGGTGTCCCCTTTTGAATCTCTCCTACTCAAAATGTA 484
Query 1840 TAGAGATGTTTTATTGCTCTAT 1861
||||||||||||||| ||||||
Sbjct 485 TAGAGATGTTTTATTACTCTAT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94427225145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5