BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491774
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29840.1 | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-depend... 2647 0.0
AT1G72810.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzy... 761 0.0
AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like super... 89.8 8e-17
> AT4G29840.1 | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-dependent
enzyme family protein | chr4:14599216-14601055 REVERSE
LENGTH=1840
Length=1840
Score = 2647 bits (1433), Expect = 0.0
Identities = 1632/1726 (95%), Gaps = 21/1726 (1%)
Strand=Plus/Plus
Query 33 tctctctttc-caatctct--aaaaaatggcttcctcttgtctcttcaacgcctctGTAT 89
|||| | ||| || ||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 17 TCTCAC-TTCTCATTCTCTAGAAAAAATGGCTTCGTCTTGTCTCTTCAATGCCTCTGTAT 75
Query 90 CTTCCTTAAACCCTAAACAAGACCCCATCCGCCGCCACCGCTCAGCCTCTCTCCTCCGCC 149
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 76 CGTCCTTAAACCCTAAACAAGACCCCATCCGCCGCCACCGGTCAACCTCTCTCCTCCGCC 135
Query 150 ACCGTCCCGTCGTCGTCTCCTGTACCGCCGATGGAAACAACAACAAAGCTCCGATCGAGA 209
|||| ||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 136 ACCGCCCCGTCGTCATCTCCTGTACCGCCGATGGCAACAACATCAAAGCCCCGATCGAGA 195
Query 210 CAGCTGTCAAGCCTCCTCACCGTACCGAGGATAACATTCGAGATGAGGCTCGTCGCAACC 269
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 196 CAGCGGTCAAGCCTCCTCACCGTACCGAGGATAACATTCGAGATGAGGCTCGTCGTAATC 255
Query 270 GTTCCACCGGCGTGAACCCATTTTCAGCTAAATACGTTCCGTTCAATGCAGCTCCTGGAT 329
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 256 GTTCCAACGCCGTGAATCCATTTTCAGCTAAATACGTTCCGTTTAATGCAGCTCCTGGAT 315
Query 330 CCACTGAGTCTTACTCTCTCGACGAGATCGTGTACCGTAGCCGCTCCGGTGGTTTGCTTG 389
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CCACGGAGTCTTACTCTCTCGACGAGATCGTGTACCGTAGCCGCTCCGGTGGTTTGCTTG 375
Query 390 ATGTTGAGCACGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTATTGGCGAGATCTCT 449
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 376 ATGTCGAACACGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTATTGGCGTGATCTCT 435
Query 450 TCGATTCGCGTGTTGGTAAAAGCACATGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TCGATTCGCGTGTTGGTAAAAGCACATGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAG 495
Query 510 AGTGGGTTCTTCCTGAGATCGATGACGACGACATCGTTTCGGCTTTTGAAGGAAACTCGA 569
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 496 AGTGGGTTCTTCCTGAGATCGATGACGACGACATCGTTTCAGCTTTTGAAGGAAACTCGA 555
Query 570 ATTTGTTCTGGGCTGAGAGATTTGGTAAACAGTTTCTAGGAATGAATGATCTGTGGGTGA 629
|| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 556 ATCTGTTCTGGGCAGAGAGATTTGGTAAGCAGTTTCTAGGTATGAATGATCTGTGGGTGA 615
Query 630 AACACTGTGGGATTAGTCATACTGGAAGTTTCAAGGATCTTGGAATGACTGTTTTGGTTA 689
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 616 AACACTGTGGGATTAGTCATACAGGAAGTTTCAAGGATCTTGGAATGACTGTTTTGGTTA 675
Query 690 GTCAAGTCAATCGTCTGAGAAAAATGAAACGACCTGTTGTTGGTGTTGGATGTGCTTCCA 749
||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 676 GTCAAGTTAATCGTCTGAGAAAGATGAAACGACCTGTGGTTGGTGTCGGATGTGCTTCCA 735
Query 750 CCGGAGATACTTCTGCGGCTCTATCCGCTTATTGTGCCTCTGCTGGAATCCCATCGATTG 809
|||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 736 CCGGAGATACTTCTGCTGCTCTATCTGCTTACTGCGCCTCCGCTGGAATCCCATCGATTG 795
Query 810 TGTTCTTACCGGCGAATAAGATCTCAATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTG 869
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 796 TGTTTTTACCGGCGAACAAGATCTCTATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTG 855
Query 870 CGTTTGTTTTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGAGATAA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CGTTTGTTTTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGAGATAA 915
Query 930 CAGCGGAATTGCCGATTTATTTGGCTAATTCGTTGAATAGTTTGAGGTTAGAAGGGCAGA 989
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 916 CTGCGGAATTGCCGATTTATTTGGCGAATTCGTTGAATAGTTTGAGGTTAGAAGGGCAGA 975
Query 990 AAACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAAGTTCCGGATTGGGTGATTG 1049
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 976 AAACTGCAGCTATTGAGATTTTGCAGCAGTTTGATTGGCAAGTTCCTGATTGGGTGATTG 1035
Query 1050 TTCCTGGAGGCAATCTAGGAAACATCTATGCTTTTTACAAAGGATTCAAGATGTGTCAAG 1109
|||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1036 TTCCTGGAGGTAACCTAGGAAACATCTATGCCTTTTACAAAGGGTTTAAGATGTGTCAAG 1095
Query 1110 AACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTAATC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTAATC 1155
Query 1170 CTCTTTACTTGCACTACAAGTCTGGTTGGAAGGACTTCAAGCCCATGACTGCAAGCACCA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1156 CTCTTTACTTGCACTACAAGTCTGGTTGGAAGGACTTCAAGCCCATGACTGCAAGTACCA 1215
Query 1230 CTTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGTGTACGCTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CTTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGTGTACGCTC 1275
Query 1290 TCAAGAAGTGCAACGGTATTGTAGAAGAAGCCACTGAGGAGGAGCTGATGGATGCAATGG 1349
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1276 TCAAGAAGTGCAATGGTATTGTAGAAGAAGCCACAGAGGAGGAGCTGATGGATGCGATGG 1335
Query 1350 CTCAAGCAGATTCGACGGGAATGTTTATCTGTCCACATACAGGTGTAGCTCTAACTGCTC 1409
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1336 CTCAAGCGGATTCGACAGGAATGTTTATCTGTCCTCATACAGGTGTTGCTCTAACTGCTC 1395
Query 1410 TGTTCAAGCTGAGGAACCAAGGAGTGATTGCTCCGACTGATCGAACCGTGGTTGTGAGTA 1469
|||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1396 TGTTCAAGCTGAGGAATCAAGGAGTGATTGCACCGACTGATCGAACTGTGGTAGTGAGTA 1455
Query 1470 CTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATCGATTACCACTCCAATGCCATCCCTG 1529
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1456 CTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATAGATTATCACTCCAATGCCATCCCTG 1515
Query 1530 ACATGGCCTGCAGATTCTCCAATCCTCCTGTTGATGTAAAAGCAGATTTCGGAGCTGTCA 1589
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1516 ACATGGCTTGCAGATTCTCCAATCCTCCTGTTGATGTGAAAGCAGATTTCGGAGCTGTCA 1575
Query 1590 TGGATGTTCTCAAGAGCTACTTAGGAAGTAATACACTTACGTCATAAGAAACA-GAGCAT 1648
|||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1576 TGGATGTTCTCAAGAGTTACTTAGGAAGTAATACACTTACGTCATAAGAGACAAGACCAT 1635
Query 1649 AAGCTTTAGCTGTTTTGTCtttttttGAAAACTGTTAGCCGTTTGTTTGC-T--C----- 1700
|| ||||||||||||||| ||||| ||||||| |||| ||||||||||| | |
Sbjct 1636 AATCTTTAGCTGTTTTGT-TTTTT--GAAAACTTTTAGACGTTTGTTTGCGTTACTCTTC 1692
Query 1701 A--TC-T-T-TCTGTGATCTTTATCTGTTTCTCAGTTTTCCAATAA 1741
| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 1693 AACTCATCTCTCTGTGATCTTTATCTGTTTCTCAGTTTTCCAATAA 1738
Score = 89.8 bits (48), Expect = 8e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1742 TGTAAGCGATAAATCTAAAGTTTCCGGTCAAAATCAACCTGTTGCAGATTACATTGT 1798
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1784 TGTAAGCGATAAATCTAAAGACTCCGGTCAAAATCAACCTGTTGCAGATTATATTGT 1840
> AT1G72810.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme
family protein | chr1:27398591-27400417 REVERSE LENGTH=1744
Length=1744
Score = 761 bits (412), Expect = 0.0
Identities = 1006/1290 (78%), Gaps = 51/1290 (4%)
Strand=Plus/Plus
Query 341 TACTCTCTCGACGAGATCGTGTACCGTAGC-CGCTCCGGTGGTTTGCTTGATGTTGAGCA 399
||||| |||||||||||||| |||||| | | ||||||| | | || || || ||||
Sbjct 283 TACTCCCTCGACGAGATCGTCTACCGT-TCACAATCCGGTGCTCTCCTCGACGTCCAGCA 341
Query 400 CGATATGGAGGCTTTGAAGCGATTCGATGGCGCGTAT-TGGCG-AGATCTCTTCGATTCG 457
||| | | || ||||| || | ||| || | | | ||||| | | || ||||||||
Sbjct 342 TGATTTCGCCGCCTTGAAACGCTACGACGGAGAAT-TCTGGCGTA-ACCTTTTCGATTCT 399
Query 458 CGTGTTGGTAAAAGCACA-TGGCCTTATGGATCGGGTGTTTGGTCGAAGAAAGAGTGGGT 516
|| || ||||||| || | ||||| || ||||| || || ||||||||||||||||||||
Sbjct 400 CGCGTCGGTAAAA-CAAATTGGCCGTACGGATCAGGCGTGTGGTCGAAGAAAGAGTGGGT 458
Query 517 TCTTCCTGAGATCGATGACGACGACATCGTTTCGGCTTTTGAAGGAAACTCGAATTTGTT 576
|| || |||||||| || ||||||||||| || ||||||||||||||||| ||| | ||
Sbjct 459 ACTCCCCGAGATCGACGATGACGACATCGTCTCTGCTTTTGAAGGAAACTCAAATCTCTT 518
Query 577 CTGGGCTGAGAGATTTGGTAAACAGTTTCTAGGAA-TGAATGATCTGTGGGTGAAACACT 635
|||||||||||||||||||||||||| ||| | || |||| ||||| ||||||||||| |
Sbjct 519 CTGGGCTGAGAGATTTGGTAAACAGTATCT-GCAAATGAACGATCTTTGGGTGAAACATT 577
Query 636 GTGGGATTAGTCATACTGGAAG-TTTCAAGGATCTTGGAATGACTGTTTTGGTTAGTCAA 694
|||| || || || ||||| ||| ||| |||| || |||| |||| | ||| |||
Sbjct 578 GTGGAATCAGCCACACTGGCTCCTTTAAAG-ATCTGGGCATGAGTGTTCTCGTTTCTCAG 636
Query 695 GTCAATCGTCTGAGAAAAATGAAACGA-CCTGTTGTTGGTGTTGGATGTGCTTCCACCGG 753
|| |||||||| | |||||||| | | || || | || ||||| || ||||| || ||
Sbjct 637 GTGAATCGTCTCCGGAAAATGAA-CAAACCAGTCATCGGAGTTGGTTGCGCTTCTACTGG 695
Query 754 AGATACTTCTGCGGCTCTATCCGCTTATTGTGCCTCTGCTGGAATCCCATCGATTGTGTT 813
|||||| || || ||||| || ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 696 AGATACCTCCGCTGCTCTCTCTGCTTACTGTGCTTCCGCTGGAATCCCCTCGATTGTCTT 755
Query 814 CTTACCGGCGAATAAGATCTCAATGGCTCAGCTGGTTCAGCCGATAGCTAATGGTGCGTT 873
|||||| ||| |||| ||||| ||||||||||| || |||||||| || || || |||||
Sbjct 756 CTTACCTGCGGATAAAATCTCCATGGCTCAGCTTGTGCAGCCGATTGCAAACGGAGCGTT 815
Query 874 TGTT-TTGAGTATTGACACTGATTTTGATGGGTGTATGAAGCTGATTAGAGA-GATAACA 931
||| || |||||||||||||||||||| || |||||| | |||| ||||| | || |
Sbjct 816 TGTGCTT-AGTATTGACACTGATTTTGACGGATGTATGCATTTGATCAGAGAAGTTA-CG 873
Query 932 GCGGAA-TTGCCGATTTATTTGGCTAATTCGT-TGAATAGTTTGAGGT-TAGAAGGGCAG 988
||||| || || ||||| ||||| || || | | || || | | | | ||||| ||
Sbjct 874 GCGGAGCTT-CCTATTTACTTGGCGAACTC-TCTCAACAGCCTCCG-TCTCGAAGGTCA- 929
Query 989 AAA-ACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAAGTTCCGGATTGGGTGAT 1047
||| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 930 AAAGACGGCGGCGATTGAGATTCTGCAGCAGTTTAATTGGCAAGTTCCTGATTGGGTCAT 989
Query 1048 TGTTCCTGGAGGCAATCTAGGAAACATCTATGCTTTTTACAAAGGATT-CAAGATGTGTC 1106
|||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||
Sbjct 990 TGTTCCTGGAGGCAATCTTGGTAACATCTATGCGTTTTACAAAGGGTTTCAT-ATGTGTA 1048
Query 1107 AAGAACTGGGACTTGTCGATAGGATCCCGAGGATGGTCTGTGCACAAGCAGCTAATGCTA 1166
|||| | || ||||| ||| | ||||| ||| | || ||||| ||||| |||||||| |
Sbjct 1049 AAGAGTTAGGTCTTGTTGATCGTATCCCTAGGCTTGTTTGTGCTCAAGCTGCTAATGCAA 1108
Query 1167 ATCCTCTTTACTTGCACTACAAGTCTGG-TTGGAAG--GACTTCAAGCCCAT-GACTGCA 1222
|||| ||||||||||| ||||| ||||| || ||| || ||||| || || || |||
Sbjct 1109 ATCCACTTTACTTGCATTACAAATCTGGGTTTAAAGAAGATTTCAATCC-ATTGAAAGCA 1167
Query 1223 AGCACCAC-TTTCGCCTCTGCGATTCAGATCGGTGACCCTGTCTCCATCGATAGAGCTGT 1281
| ||| || ||| || ||||| |||||||| ||||||||||| || || |||||||||||
Sbjct 1168 AACACTACATTT-GCTTCTGCTATTCAGATTGGTGACCCTGTTTCGATTGATAGAGCTGT 1226
Query 1282 GTACGC-TCTCAAGAAGTGC-AACGGTATTGTAGAAGAAGCCACTGAGGAGGAGCTGATG 1339
||| || | | ||||| | | || || ||||| || ||||| || ||||| ||| |||||
Sbjct 1227 GTATGCGT-TGAAGAAAT-CTAATGGGATTGTTGAGGAAGCTACAGAGGAAGAGTTGATG 1284
Query 1340 GATGCAATGGCTCAAGCAGATTCGACGGGAATGTTTATCTGTCCACATACAGGTGTAGC- 1398
||||||| |||| || ||||| || || |||||||| ||||||||||| ||||| ||
Sbjct 1285 GATGCAACAGCTCTTGCTGATTCTACTGGTATGTTTATATGTCCACATACTGGTGTTGCA 1344
Query 1399 TCTAACTGC-TCTGTTCAAGCTGAGGAAC-CAAGGAGTGATTGCTCCGACTGATCGAACC 1456
| | || || | || | |||||||| || || ||||| |||| ||| |||||| ||
Sbjct 1345 T-TGACGGCGT-TGATGAAGCTGAGAAAGTCA-GGAGTTATTGGAGCGAATGATCGGACT 1401
Query 1457 GTGGTTGTGAGTACTGCTCATGGGTTGAAGTTTACTCAGTCTAAGATCGATTACCACTCC 1516
||||| |||||||| |||||||| ||||||||||| || |||||| ||||| || ||
Sbjct 1402 GTGGTGGTGAGTACAGCTCATGGATTGAAGTTTACACAAAGTAAGATTGATTATCATTCT 1461
Query 1517 AATGC-CATCCCTGACATGGCCTGCAGATTCTCCAATCCTCCTGTTGATG-TAAAAGCAG 1574
|| | ||| || ||||| || ||||| | ||||| || || || | | || |||
Sbjct 1462 AA-GAACATAAAGGAGATGGCTTGTAGATTGGCGAATCCACCAGT-GAAGGTTAAGGCAA 1519
Query 1575 A-TTTCGGAGCTGTCATGGATGTTCTCAAG 1603
| ||| || | || |||||||||||||||
Sbjct 1520 AGTTT-GGTTCAGTTATGGATGTTCTCAAG 1548
> AT4G29830.1 | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily
protein | chr4:14597661-14599300 FORWARD LENGTH=1176
Length=1176
Score = 89.8 bits (48), Expect = 8e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 1742 TGTAAGCGATAAATCTAAAGTTTCCGGTCAAAATCAACCTGTTGCAGATTACATTGT 1798
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1148 TGTAAGCGATAAATCTAAAGACTCCGGTCAAAATCAACCTGTTGCAGATTATATTGT 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88955365740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5