BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491776
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29820.1 | Symbols: CFIM-25, ATCFIM-25 | homolog of CFIM-25 ... 1585 0.0
> AT4G29820.1 | Symbols: CFIM-25, ATCFIM-25 | homolog of CFIM-25
| chr4:14595680-14597481 REVERSE LENGTH=1200
Length=1200
Score = 1585 bits (858), Expect = 0.0
Identities = 989/1050 (94%), Gaps = 17/1050 (2%)
Strand=Plus/Plus
Query 1 GCGGAGAAGGACTCTCTGAAGCCGCCACGTCTCAGTGATCCGACTACGACACCTTTCTTC 60
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGAGAAGTACTCTCTGGAGCCGCCACGTCTCAGTGATCCGACTACGACACCTTTCTTC 60
Query 61 ACTCTTCTTCTTGCGTCTTCTCTGCTTTTAG-GGTCTCTCTGTTATTTAATTTTAATCCA 119
||||||||||||||||||||||||| | | | |||||||||||||||||||||||||| |
Sbjct 61 ACTCTTCTTCTTGCGTCTTCTCTGC-TCTCGTGGTCTCTCTGTTATTTAATTTTAATCGA 119
Query 120 TCGAGATCGCTTTTAGCTCTCTATCTTTGAATTTTCCGGGaaaaaaaaaTGGGAGAAGAA 179
| ||||||||||||||||||| |||||||||||| |||| | |||||||| ||||||
Sbjct 120 TTGAGATCGCTTTTAGCTCTC-GTCTTTGAATTTTACGGG--CAGAAAATGGGTGAAGAA 176
Query 180 GCTCGAGCTTTAGATATGGAGGAGACCAGTGAAGAGAGCACGACGAGAAGAAACCATGTC 239
|||||||| |||||||||||||||| ||||| | | | |||||||||| ||||| |||||
Sbjct 177 GCTCGAGCGTTAGATATGGAGGAGATCAGTG-ACA-A-CACGACGAGACGAAACGATGTC 233
Query 240 GTTCATGACTTTATGGTTGATTTATACCCGCTTAGCAGCTACTACTTCAGTTCAAGAGAC 299
||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 234 GTTCATGACTTGATGGTTGATTTATACCCGCTTAGCAGCTACTACTTCGGTTCAAAAGAA 293
Query 300 GCTCTTCGCGTCAAGGACGAGATTATCTCTGATCGGGTCGTCAGATTGAAATCCAATTAT 359
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 294 GCTCTTCGCGTCAAGGACGAGATTATCTCTGATCGAGTCATCAGATTGAAATCCAATTAT 353
Query 360 GCTGCTCATGGATTGAGAACTTGCGTTGAAGCTGTTCTTCTGGTTGAGTTATTCAAGCAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 354 GCTGCTCATGGATTGAGAACTTGCGTTGAAGCTGTTCTTCTGGTTGAGTTGTTCAAGCAT 413
Query 420 CCTCATGTTTTGCTTCTTCAATATAGAAACTCTATTTTCAAGCTTCCTGGTGGTCGTTTA 479
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 414 CCTCATGTTTTGCTTCTTCAATATAGAAACTCCATTTTCAAGCTTCCTGGTGGTCGTTTG 473
Query 480 AGACCTGGAGAATCAGATATTGAAGGTGTACAACGGAAACTAGCATCAAAGCTATCGGTT 539
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 474 AGACCTGGAGAATCAGATATTGAAGGTCTAAAACGGAAACTAGCATCAAAGCTATCGGTT 533
Query 540 AACGAAAATGTCGTTGTTCCGGGTTTA-GAGGTAGGGGAATGTATTGGGATGTGGTGGAG 598
||||||||||| | |||| |||| ||| |||||||| |||||||||||||||||||||||
Sbjct 534 AACGAAAATGTGGGTGTTTCGGG-TTATGAGGTAGGAGAATGTATTGGGATGTGGTGGAG 592
Query 599 ACCCAACTTTGAGACATTGATGTATCCTTTCTTGCCACCTAATGTAAAACACCCAAAGGA 658
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 593 ACCCAACTTTGAGACATTGATGTATCCTTTCTTGCCACCTAATATTAAACACCCAAAGGA 652
Query 659 ATGCACAAAGCTTTTTCTTGTGAGATTACCGGTACATCAACAGTTTGTCGTACCTAAGAA 718
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 653 ATGCACAAAGCTTTTTCTTGTGAGATTACCGGTACATCAACAGTTTGTTGTGCCTAAGAA 712
Query 719 CTTCAAACTCCTCGCTGTTCCATTGTGTCAACTCCATGAAAATGAAAAGACTTATGGGCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTTCAAACTCCTCGCTGTTCCATTGTGTCAACTCCATGAAAATGAAAAGACTTATGGGCC 772
Query 779 GATCATATCGCAAATTCCCAAGCTTCTTTCAAAATTCTCCTTCAACATGATGGAGATATG 838
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 773 GATCATGTCGCAAATTCCTAAGCTTCTTTCGAAATTCTCCTTCAACATGATGGAGATATG 832
Query 839 AACGAACCTCATAATCATTGCCTCTAGTAGCTCTTGCCC---GCAATTTGTGATAGGATT 895
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 833 AACGAACCTCATGATCATTGCCTCTAGTAGCTCTTGCCCCCCGCAATTTGTGATAGGATT 892
Query 896 ATATGTTCGGGGAAATCGTTTGTGGAGCCTCTGTGAGTCTGTGACTATGTAAATGTATAT 955
|| | || |||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 893 ATGT-TT-GGGGAAATCGTTTGTGGAGCCTCTCTGAGTCTGTGACTATATAA-TGTATAT 949
Query 956 AGGGCTTACAATATATAGACAATGTTGAAGAATAGCATGTTCTTGTTGGTTATAGAGACT 1015
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGGGCTTATAATATATAGACAATGTTGAAGAATAGCATGTTCTTGTTGGTTATAGAGACT 1009
Query 1016 AGACATGAAGTATGATTGATAGATAGATTA 1045
||||||||||||| | ||||||||||||||
Sbjct 1010 AGACATGAAGTAT-ACTGATAGATAGATTA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5