BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491777
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29810.2 | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 ... 2158 0.0
> AT4G29810.2 | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase
2 | chr4:14593039-14595269 REVERSE LENGTH=1407
Length=1407
Score = 2158 bits (1168), Expect = 0.0
Identities = 1314/1384 (95%), Gaps = 12/1384 (1%)
Strand=Plus/Plus
Query 13 GACGATGAAGAAAGGTGGATTTAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGA 72
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 25 GACGATGAAGAAAGGTGGATTCAGCAATAATCTCAAGCTCGCAATTCCTGTTGCTGGCGA 84
Query 73 GCAATCTATCACCAAATTCCTGCGGAAATGTTTTTGTTCTCTCTGTAGGACGCAGAGCGG 132
|||||| ||||||||||||||| ||||| ||||| |||||||||||||||| || |||||
Sbjct 85 GCAATCCATCACCAAATTCCTGAGGAAAGGTTTTGGTTCTCTCTGTAGGACTCAAAGCGG 144
Query 133 TACGTTTAAGGATGGAGATCTACGAGTTAACAAAGATGGAGTTCGAATTATCTCTCAATC 192
|||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 145 TACGTTTAAGGATGGAGATCTACGTGTTAACAAGGATGGAGTTCGAATCATTTCTCAATT 204
Query 193 GGAGCCTGAAGTCCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCCGATTT 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 205 GGAGCCTGAAGTCCTGTCTCCAATTAAGCCAGCTGATGATCAGCTGAGCTTGTCGGATTT 264
Query 253 GGATATGGTTAAAGTCATTGGCAAAGGAAGCAGTGGTGTTGTTCAGTTGGTTCAACACAA 312
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 265 GGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAA 324
Query 313 ATGGACTGGCCAATTTTTCGCCTTGAAGGTCATTCAACTAAATATTGATGAAGCAATTCG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATGGACTGGCCAATTTTTCGCCTTGAAGGTCATTCAACTAAATATTGATGAAGCAATTCG 384
Query 373 CAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCCTCACAGTGTCCAAATCTTGTTAC 432
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 385 CAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCGTCACAGTGTCCAAATCTTGTTAC 444
Query 433 CTCGTACCAGTCATTTTATGACAATGGTGCAATCTCACTAATCTTGGAGTACATGGATGG 492
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 445 CTCGTACCAGTCATTTTATGACAATGGCGCAATCTCACTAATCTTGGAGTACATGGACGG 504
Query 493 AGGATCTCTAGCAGACTTTCTCAAATCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGC 552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 505 AGGATCTCTAGCAGACTTTCTCAAGTCAGTTAAAGCCATCCCTGACTCCTATCTTTCTGC 564
Query 553 CATCTTTAGACAAGTGCTTCAAGGATTGATCTATCTTCATCACGATAGGCATATCATCCA 612
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 565 CATCTTTAGACAAGTGCTTCAAGGATTAATCTATCTTCATCACGATAGGCATATCATCCA 624
Query 613 CCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAATAACTGA 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAAGTCAAAATAACTGA 684
Query 673 CTTTGGTGTGAGTACCGTTATGACAAACACCGCAGGTTTAGCAAACACATTTGTGGGGAC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 CTTTGGTGTGAGTACCGTTATGACAAACACCGCAGGTTTAGCAAACACATTTGTGGGGAC 744
Query 733 TTACAATTATATGTCTCCAGAGCGAATCGTTGGAAACAAGTACAGTAACAAAAGTGATAT 792
|||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct 745 TTACAATTATATGTCTCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATAT 804
Query 793 ATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCACCTCC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCACCTCC 864
Query 853 GAATCAAGAGGAAACATGGACCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GAATCAAGAGGAAACATGGACCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACC 924
Query 913 GCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATG 984
Query 973 TTTGCAAAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTAATGGAACATCCTTTCTT 1032
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 985 TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATGGAACATCCTTTCTT 1044
Query 1033 GAACAAATACGACTACTCGGGGATCAATCTCGCGTCCTACTTCACAGATGCAGGATCGCC 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GAACAAATACGACTACTCGGGGATCAATCTCGCGTCCTACTTCACAGATGCAGGATCGCC 1104
Query 1093 ACTTGCAACACTTGGGAATCTGTCCGGTACGTTCTCGGTTTAAACTACAAGGGATACATA 1152
|||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1105 ACTTGCAACACTTGGGAACCTGTCTGGTACGTTCTCCGTGTAAACTACAAGGGAGACATA 1164
Query 1153 GTATCACCATCGGGCTCCTGTTATCATCTATCTGCAGATTTCTTGTTTTTAC-TTCCAGA 1211
|||||||||| || |||||||||||||| | |||||||||||||| || ||||||
Sbjct 1165 ATATCACCATCTGGTTCCTGTTATCATCT----GAAGATTTCTTGTTTT-ACCTTCCAGT 1219
Query 1212 GAAAAAATGATCTTTGATTACatatatagatatatttatttactgtattg-aagattata 1270
|| |||||||||||| || | | ||||||||||||| | || ||||||| |||||||||
Sbjct 1220 GATAAAATGATCTTT-ATAATACATATAGATATATTAAATTGCTGTATTTTAAGATTATA 1278
Query 1271 gatatataAGCAACATGTGAGTGTTTATTGAGAGATTTTTCACTTGGAACTCATATTTTG 1330
|||||||||| ||||| ||||||||||| | | | || ||||||||| |||| |||||
Sbjct 1279 GATATATAAGGTACATGAGAGTGTTTATTTAAAAAAATT-CACTTGGAATTCATGTTTTG 1337
Query 1331 TGATACTTTAGATTGGAATCCATTTGGGAAAAAGGAGAATCAGCTCTGTTCTAATGTCTC 1390
|||||| ||||||||||||||||||||||||| | ||||||| |||||||| |||||||
Sbjct 1338 TGATACGTTAGATTGGAATCCATTTGGGAAAA-GAAGAATCA--TCTGTTCTTATGTCTC 1394
Query 1391 AAAT 1394
||||
Sbjct 1395 AAAT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5