BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491780
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29800.2 | Symbols: PLP8 | PATATIN-like protein 8 | chr4:145... 2523 0.0
> AT4G29800.2 | Symbols: PLP8 | PATATIN-like protein 8 | chr4:14590784-14592573
REVERSE LENGTH=1696
Length=1696
Score = 2523 bits (1366), Expect = 0.0
Identities = 1534/1615 (95%), Gaps = 11/1615 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGGCGCTACGATAAA-CCGCCGCCATTGTCAGTTTCCTCCAAGGGGAAGAAGAA 59
||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||
Sbjct 38 ATGAATCGGCGCTACGA-AAAGCCACCGCCATTGTCAGTTTCCTCCAAAGGGAAGAAGAA 96
Query 60 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 GCATTTTGTCAATCACACAGCTCCCAACACTCCTGGAAATTACGAGAGGACTCAAACCAG 156
Query 120 TCCAACGTTATCAACGACTCGATCTCACGAACCCGATGATAAGCTCAATTACGAGATCTT 179
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 157 TCCAACGTTATCAACGGCTCGATCACACGAACCCGATGATAAGCTCAATTACGAGATCTT 216
Query 180 CTCGATTCTCGAAAGCAAATTTCTCTTCGGTTACGAAGACCCAAGGCTACTATGGATTCC 239
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 217 CTCAATTCTCGAAAGCAAATTTCTCTTTGGTTACGAAGACCCAAGGCTACTATGGATTCC 276
Query 240 TCGGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCGAGATCTCCGTTGAC 299
|| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 277 TCAGAGTCCATTACGACCCGGTGATTCCGAAGCAGGTCCTTCTCCCAGATCACCGTTGAC 336
Query 300 TCCAAACGGCGTCGTTCTCCCAGGAACACCGTCTTCATCGTTT-AGAAGTCCAAGAGGAA 358
||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||
Sbjct 337 TCCAAACGGCGTCGTTCTCCCGGGAACACCGTCTTCATC-TTTCAGAAGTCCGAGAGGAA 395
Query 359 GAATCTGTGTTTTGAGCATTGACGGTGGCGGAATGAGAGGTCTTTTGGCGGGAAAATCCC 418
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 396 GAATCTGCGTTTTGAGCATTGACGGTGGCGGTATGAGAGGTCTTTTGGCGGGAAAATCCC 455
Query 419 TAATCTATCTT-GAGCAGATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCA 477
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TAATCTAT-TTAGAGCAAATGCTGAAAGAGAAATCCGGCGATCCAAACGCTCGAATCGCC 514
Query 478 GATTACTTCGACGTCGCTGCCGGATCAGGAGTCGGCGGAGTCTTCGCGGCGATGATATTC 537
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 515 GATTACTTCGACGTCGCTGCCGGATCAGGTGTCGGTGGAGTATTCGCTGCGATGATATTT 574
Query 538 GCGACTAGAGACGGTAACCGCCCGATTTTCAAAGCCGAAGACACTTGGAAATTCCTCGTC 597
||||| |||||||| ||||||||||||||||| || || |||||||||||||| |||||
Sbjct 575 GCGACAAGAGACGGCAACCGCCCGATTTTCAAGGCGGAGGACACTTGGAAATTTCTCGTA 634
Query 598 GAAAACGCCGAGGGATTCTACAGATCAGGCG-GCGGAAGTGGAGGAGGAGGAGCAGGAGC 656
|| ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 635 GAGAACGCAGAAGGATTCTACAGATCAGG-GAGCGGAAGTGGAGGAGGAGGAGCAGGAGC 693
Query 657 AGCGATAAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 716
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GGCGATTAAACGGGTCATAAGATCTGGATCCGGATCCGGATCATCTTCAGTAACCGCCGC 753
Query 717 AACGGCAAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AACGGCGAAGCTAGAAAAAGCAATGAAAGCATCATTCGCCGATCTAACGCTTAAAGACAC 813
Query 777 ACTCAAACCAATCCTCATCTCTTGCTACGATCTCTCAAGTACGGCGCCGTTTCTATTCTC 836
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 814 ACTCAAACCAATTCTCATCTCTTGCTACGATCTCTCAAGCACGGCTCCGTTTCTATTCTC 873
Query 837 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTCCGTCTCCGAGATATTTGCCGCGC 896
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 874 ACGCGCCGACGCGTTAGAAAGCGACAGTTTCGATTTTCGTCTCCGAGATATTTGCCGTGC 933
Query 897 CACGTGGGCAGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTTGACGGGAAAAC 956
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 934 CACATGGGCGGAGCCGGGGACGTTTGATCCGGTTCGCACGTGTTCCGTCGACGGGAAAAC 993
Query 957 GCGGTGCGTTGCGGTGGGAGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1016
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GCGGTGCGTTGCGGTGGGGGGTGGATTAGCGATGAGTAATCCGACGGCGGCGGCGATAAC 1053
Query 1017 GCACGTGTTTCATAACAAACAGGAGTTTCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1076
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1054 GCACGTGTTTCATAACAAACAGGAGTTCCCGGCGGTGAAAGGAGTGGAGGATTTGTTGGT 1113
Query 1077 GTTGTCGCTTGGAACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAGCAGGTTAAGAA 1136
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1114 GTTGTCGCTTGGGACTGGTCAGCTTTTTGAAGTGAATTATGATTATGAACAGGTTAAGAA 1173
Query 1137 TTGGCGGGTTAAAGAATGGGCTCGGCCCATGGCGAGGATCTCTGGTGATGGATCTGCTGA 1196
|||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1174 TTGGCGCGTTAAGGAATGGGCTCGGCCCATGGCGAGAATCTCTGGTGATGGGTCTGCTGA 1233
Query 1197 GTTTGTTGATCAGGCTGTTGCTATGGGCTTTGGGCCTTATCGGAGTAGTAATTACGTTCG 1256
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1234 GTTTGTTGATCAAGCTGTTGCTATGGGCTTTGGGCCTTACCGAAGTAGTAATTACGTTCG 1293
Query 1257 CATTCAG--G-CAAATGGATCGCGATTAGGAGCATGTGGACCGAACGTGGACACAGATCC 1313
||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1294 CATTCAGCAGGCAAATGGATCGCGATTAGGAGCTTGTGGACCGAACGTGGACACGGATCC 1353
Query 1314 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATCGCTGATGAGATGTTGAAGCAAAACAA 1373
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1354 AAGAGCAGAGAATGTGAAGAAACTGACGGAGATAGCTGATGAGATGTTGAAGCAAAACAA 1413
Query 1374 TGTGGAATCGGTTTTGTTCGGAAGCAAAAGGATCGGAGAAATGAGTAATTCAGAGAAACT 1433
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 1414 TGTGGAGTCGGTTTTGTTCGGAAGCAAAAGGATAGGAGAAATGAGCAATTCAGAGAAAAT 1473
Query 1434 AGAGTGGTTCGCGAGTGAGCTGGTCATTGAGCAGCAGCGACGAAGTGTCAGAGCGTCTCC 1493
||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1474 AGAGTGGTTTGCGAGCGAGCTTGTCATTGAGCAGCAGCGACGAAGTGTTAGAGCGTCTCC 1533
Query 1494 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACCAACCGCAACGCTATAAACGCTACTCT 1553
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1534 AACCGTAACGCTAAAGCAAGCTGTGTCCAAAACTAACCGCAATGCTATAAACGCAACTCT 1593
Query 1554 CACTCTCATATCTAAAGAAAGATGAAAACATCtttttttAGTGCTTCCTATTGGT 1608
|||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 1594 CACTCTCATATCTAAAGATAGATGAAAACACCTGTTTTTGGTGCTTCCTATTGGT 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5